BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930178

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47320.1 | Symbols:  | transposable element gene | chr1:1734...   292    1e-78
  AT1G47317.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   230    9e-60


> AT1G47320.1 | Symbols:  | transposable element gene | chr1:17349099-17350163 
FORWARD LENGTH=780
Length=780

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 253/297 (85%), Gaps = 13/297 (4%)
 Strand=Plus/Plus

Query  23   ATGGCGGCACTGAAAACAACAATCCT-CATCATTTTCGGCTTCTATCTCTCATGTATGTT  81
            ||| ||||| ||| || |||||| || |||||||||||  |||||||||||||||| |||
Sbjct  1    ATGACGGCATTGAGAAGAACAAT-CTCCATCATTTTCGTTTTCTATCTCTCATGTACGTT  59

Query  82   GTTGGTGGGTATCTTTGGAGTTCAAGTC-G-AA-TCATGTAGGACAGATGAAGAGTGTAG  138
            ||| |||  ||||||||||||||||| | | || | ||| | |||||||||||| ||| |
Sbjct  60   GTTCGTGAATATCTTTGGAGTTCAAGCCAGAAATTTATGCAAGACAGATGAAGATTGT-G  118

Query  139  -GTTGCTATGTTC-AGATGAAGGTGCGGAA-TGTATTCTTAGAGTGTGCAATTGTTCGAA  195
             ||||| ||| || ||||  |||||| ||| ||||||||| || | ||| ||||||||  
Sbjct  119  TGTTGCGATG-TCAAGATCCAGGTGC-GAACTGTATTCTTGGAATATGCCATTGTTCG-C  175

Query  196  ACTAA-AAGTTGAGACTGAACCGACCAAGGCGAAAAGATGCAAGACTGATCGTGATTGTC  254
             | || ||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct  176  GCCAACAAGTTGAGACTGAGCTGACCAAGGTGATAAGATGCAAGACTGATCGTGATTGTC  235

Query  255  CTGTTTCTCATCCATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT  311
            ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  CTGATTCTCATCAATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT  292


> AT1G47317.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr1:17347094-17347515 FORWARD LENGTH=312
Length=312

 Score =  230 bits (124),  Expect = 9e-60
 Identities = 255/317 (80%), Gaps = 13/317 (4%)
 Strand=Plus/Plus

Query  23   ATGGCGGCACTGAAAACAACAATCCTCATCATTTTCGGCT-TCTATCTCTCATGTATGTT  81
            |||||| || |||||||||||||| | ||||| |||   | ||||| |||||||||   |
Sbjct  1    ATGGCGACATTGAAAACAACAATCTTTATCATCTTC-ATTCTCTATATCTCATGTACAAT  59

Query  82   GTTGGTGGGTATCTTTGGAGTTCAAGTCGA---ATCATG-TAGGAC-AGATGAAGAGTGT  136
            ||| ||   ||||||| ||||||||| |||   |||||| |  ||| | |  ||||||||
Sbjct  60   GTTTGTAAATATCTTTAGAGTTCAAGCCGATGCATCATGCT-TGACAACA-AAAGAGTGT  117

Query  137  AG-GTTGC-TATGTTCAGATGAAGGTGCGGAATGTATTCTTAGAGTGTGCAATTGTTCGA  194
             | | ||| | |||||||| |||| |||  | ||||||| | | | |||| ||||| || 
Sbjct  118  -GTGGTGCGT-TGTTCAGACGAAGATGCACAGTGTATTCATGGCGAGTGCCATTGTCCGC  175

Query  195  AACTAAAAGTTGAGACTGAACCGACCAAGGCGAAAAGATGCAAGACTGATCGTGATTGTC  254
            | |||||||| || | ||| ||||||||||||| | | ||||||||||||| ||||||||
Sbjct  176  ACCTAAAAGTCGACATTGAGCCGACCAAGGCGATACGGTGCAAGACTGATCTTGATTGTC  235

Query  255  CTGTTTCTCATCCATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAATGTA  314
            ||| | |||||| |||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct  236  CTGATCCTCATCAATGCCCTAAATATGATTATTATGCATGCCTTAATAATGGAGAATGTA  295

Query  315  CTTGTATCGCTGTTTAA  331
            |||||||| ||||||||
Sbjct  296  CTTGTATCTCTGTTTAA  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5