BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930186

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22120.1 | Symbols: CWLP | cell wall-plasma membrane linker ...   494    3e-139


> AT3G22120.1 | Symbols: CWLP | cell wall-plasma membrane linker 
protein | chr3:7794957-7796310 REVERSE LENGTH=1354
Length=1354

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 293/306 (96%), Gaps = 0/306 (0%)
 Strand=Plus/Minus

Query  85    GACATTTGAAGCCAGGTGGTGGAGTTTTTCCACAGTCGAGAAGAAGCTCAAGAGCAATGG  144
             ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1020  GACATTTGAAGTCAGATGGTGGAGTTTTTCCACAGTCGAGAAGAAGCTCAAGAGCAATGG  961

Query  145   GGAGAATAAGGTCGATGTTGAGAAGTTTGAGCTTAATGGTGGTACATAGACACACGGCTG  204
             |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  960   GGAGAACAAGGTCGATGTTGAGAAGTTTGAGCTTAATGGTGGTACATAGACAAACGGCTG  901

Query  205   CGTCTAGGTCAAGTAAACCTCCCAAAACCGGACAACACTCTTCCTTGGCGCGGCTTTTCC  264
             |||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||| |
Sbjct  900   CGTCTAGGTCAAGTAAACCTCCTAAAACCGGACAACATTCTGCCTTGGCGTGGCTTTTTC  841

Query  265   CAAGCCCGATGTGAATCAAACCTCCAAGAACGTCCACACAACCGCCTAGCTTCAGCGTGT  324
             |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  840   CAAGTCCGATGTGAATCAAACCTCCAAGAACGTCCACACAAGCGCCTAGCTTCAGCGTGT  781

Query  325   CGATTGGGCAGGTCTCTGGAATAGGCGTAGGAGGAGTTGGTGTTGGTGGTGTTACTACGG  384
             | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  780   CAATTGGGCAAGTCTCTGGAATAGGCGTAGGAGGAGTTGGTGTTGGTGGTGTTACTACGG  721

Query  385   GTGGTG  390
             ||||||
Sbjct  720   GTGGTG  715


 Score =  122 bits (66),  Expect = 2e-27
 Identities = 78/84 (93%), Gaps = 0/84 (0%)
 Strand=Plus/Minus

Query  1     AACGCCTTTTATTGTATCAAATGAAACATGTAACTAAAGGTCGCACACACGCAAATCAAC  60
             ||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||
Sbjct  1180  AACGCCTTTTATTGTATCAAATGAAACATGTAACTAAAGGTCGCACATATGCAGATTAAC  1121

Query  61    CTCCCATTAGCAAAGAGATCATGA  84
             ||||||||| |||| |||||||||
Sbjct  1120  CTCCCATTACCAAATAGATCATGA  1097



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5