BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930189
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22160.1 | Symbols: | VQ motif-containing protein | chr3:78... 1027 0.0
> AT3G22160.1 | Symbols: | VQ motif-containing protein | chr3:7817857-7818985
REVERSE LENGTH=1129
Length=1129
Score = 1027 bits (556), Expect = 0.0
Identities = 605/628 (96%), Gaps = 6/628 (1%)
Strand=Plus/Plus
Query 1 TCTT-TCTTGTAGACACa-a-aaaaaTGGCTAACCCCAACGAGTGGTCTCAGTTCTACAA 57
|||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCTTGTCTT-TAGACACACACAAAAATGGCTAACCCCAACGAGTGGTCTCAGTTCTACAA 294
Query 58 CAATAACCAAACCTTCTTCACAACTTCCACCACCGCATCAACCGCTGTCACAACCACCAC 117
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 295 CAATAACCAAACCTTCTTCACAACTTCTACCACCGCTTCAACCGCTGTTACAACCACCAC 354
Query 118 TGCCGGTGATACCACCTCCATAGACTCTCGTCTGAGTCCAGAAACTGGCCGTGTAACCAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGCCGGTGATACCACCTCCATAGACTCTCGTCTGAGTCCAGAAACTGGCCGTGTAACCAA 414
Query 178 GCCAACACGTAGAAGATCCAGAGCCTCACGTAGAACACCAACAACGCTTCTCAACACCGA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GCCAACACGTAGAAGGTCCAGAGCCTCACGTAGAACACCAACAACGCTTCTCAACACCGA 474
Query 238 CACGTCCAACTTCCGTGCCATGGTTCAGCAATACACTGGCGGACCATCCGCTATGGCTTT 297
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 CACTTCCAACTTCCGTGCCATGGTTCAGCAATACACTGGCGGTCCATCCGCTATGGCTTT 534
Query 298 CGGGTCCGGTAGTACTACTTCTGGTTTCAGCCTCACCTCATCGTCAGATCCATCAGCTGG 357
||||||||||| ||||||||||| ||| |||||||| |||||||| ||||||||||||||
Sbjct 535 CGGGTCCGGTAATACTACTTCTGCTTTTAGCCTCACTTCATCGTCGGATCCATCAGCTGG 594
Query 358 ATCTTCTCAACAAGCTC-TATGGCAATATAATTTCCAGCCTCACGCGCCGCTGCAGCCAC 416
||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 595 ATCTTCTCAACAAGCTCCT-TGGCAATATAATTTCCAGCCTCACGCGCCGCTTCAGCCAC 653
Query 417 CGCAACGGCCTTACATGTTTTCTTTGAACAACGTGAATCCCGTGGTTGGATATAGTAACA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CGCAACGGCCTTACATGTTTTCTTTGAACAACGTGAATCCCGTGGTTGGATATAGTAACA 713
Query 477 TGAACAACCCTAATACGGTGGTTTCCGGTGTGTTTGGGACGGTGGATGGTTCTGGTGGAG 536
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGAACAACCCTAATACGATGGTTTCCGGTGTGTTTGGGACGGTGGATGGTTCTGGTGGAG 773
Query 537 GAGGTTCTGCACCGTCGTCTAAGGAGGCTACGAATAGTAATACTTCTTCTTCGAGGTTCC 596
|||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct 774 GAGGTTCTGCTCCGTCGTCAAAGGAGGCTACGAATAGTAATTCTTCTTCTTCGAGGTTGC 833
Query 597 AATGAGAAAACGATTGGATTCTTTTTGA 624
||||||||||||||||||||||||||||
Sbjct 834 AATGAGAAAACGATTGGATTCTTTTTGA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5