BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930190

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascor...   265    3e-70


> AT1G07890.3 | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate 
peroxidase 1 | chr1:2437725-2439665 FORWARD LENGTH=1022
Length=1022

 Score =  265 bits (143),  Expect = 3e-70
 Identities = 155/161 (96%), Gaps = 0/161 (0%)
 Strand=Plus/Plus

Query  41   ATGGCACTCTGCTGGAACTTTCGATTGTCAATCGAGGACTGGAGGTCCATTCGGAACAAT  100
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  159  ATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTCGGAACAAT  218

Query  101  GAGGTTTGATGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT  160
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  GAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTT  278

Query  161  GTTGGATCCCATCAGGGAGCAATTACTTACTATCTCTTTTG  201
            |||||| ||||||||||||||||| | ||| ||||||||||
Sbjct  279  GTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTG  319


 Score =  196 bits (106),  Expect = 1e-49
 Identities = 124/133 (93%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  201  GACAAGCCCCAGCCACCTCCAGAGGGTCGTCTTCCTGATGCTACAAAGGGTTTTGATCAC  260
            ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| || 
Sbjct  400  GACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCAT  459

Query  261  TTGAGAGATGTCTTTGCTAAGCAGATGGGCTTCTCTGACAAGGACATTGTCGCCTTATCC  320
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| 
Sbjct  460  TTGAGAGATGTCTTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTCGCTTTATCT  519

Query  321  GGTGCCCACACTC  333
            |||||||||||||
Sbjct  520  GGTGCCCACACTC  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5