BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930194
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22190.1 | Symbols: IQD5 | IQ-domain 5 | chr3:7831280-783390... 1995 0.0
AT3G22183.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 165 1e-39
> AT3G22190.1 | Symbols: IQD5 | IQ-domain 5 | chr3:7831280-7833904
REVERSE LENGTH=1425
Length=1425
Score = 1995 bits (1080), Expect = 0.0
Identities = 1213/1277 (95%), Gaps = 9/1277 (1%)
Strand=Plus/Plus
Query 16 ATACAATGGGAGCTTCAGGGAGATGGATTAAAGCATTGGTTGGTTTTACTAAATCTGATA 75
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 ATAGAATGGGAGCTTCAGGGAGATGGATTAAAGCATTGGTTGGTTTTACTAAATCTGATA 211
Query 76 AGTCTAAGTCTTCAAAGAAAGATGAAAATGTGAAGGTTGCGT-CCAAGAGTAGGTTTGGG 134
|||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 212 AGTCTAGGTCTTCCAAGAAAGATGAAAATGTGAAGGTTGC-TACCAAGAGTAGGTTTGGG 270
Query 135 AGAAAGAATTCAGTTGATTTCGACTTTGAGAAA-TTTCAAGATGGATTTGAAGAGTCCAA 193
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 271 AGAAAGAATTCAGTTGATTTTGACTTTGA-AAAGTTTCAAGATGGATTTGAAGATTCCAA 329
Query 194 TACGCGTAGTATGATTGATACTGGGGTCTCTACTTCAAATTCACTACAGTCATATGGGGG 253
||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 330 TACGCGTAGTATGGTTGATACTGGGGTCTCTACTTCAACTTCACTACAATCATATGGGGG 389
Query 254 TGTAGCTTCTGAAGAACGTAGTAGGGAAAATCGCGCTGCAACGCGTATCCAAACAGCTTA 313
||| |||| ||| |||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 390 TGTTGCTTATGACGAACAAAGTAGGGAAAATCGGGCTGCAACGCGTATCCAAACGGCTTA 449
Query 314 TCGGGGATTTCTGGCTAGAAGGGCTTTACGAGCGTTGAAGGGATTGGTTAGACTTCAAGC 373
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TCGGGGATTTCTGGCTAGGAGGGCTTTACGAGCGTTGAAGGGATTGGTTAGACTTCAAGC 509
Query 374 CCTTGTTAGAGGACATGCTGTGAGAAAACAAGCTGCTGTAACGCTTCGATGCATGCAAGC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CCTTGTTAGAGGACATGCTGTGAGAAAACAAGCTGCTGTAACGCTTCGATGCATGCAAGC 569
Query 434 GTTGGTAAGAGTTCAGGCTCGTGTACGCGCAAGACGTGTTCGTCTCGCCTTGGAATTGGA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GTTGGTAAGAGTTCAGGCTCGTGTACGCGCAAGACGTGTTCGTCTCGCCTTGGAATTGGA 629
Query 494 AAGTGAAAC-AGGTCAGCAGACACTTCAGCAACAGCTAGCAGATGAAGCCCGAGTTCGAG 552
|||||| || || ||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 630 AAGTGAGACGAG-TCAGCAGACACTTCAACAACAGTTAGCAGATGAAGCCCGAGTTCGAG 688
Query 553 AAATAGAGGAAGGTTGGTGCGATAGCATTGGATCTGTTGAACAAATCCAAGCCAAGCTAC 612
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 689 AAATAGAGGAAGGTTGGTGCGATAGCATTGGATCTGTTGAACAAATTCAAGCCAAGCTGC 748
Query 613 TAAAGAGGCAGGAGGCTGCAGCTAAGCGCGAGAGGGCTATGGCATATGCTTTGACTCACC 672
||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 749 TAAAGAGGCAGGAAGCTGCAGCTAAGCGTGAGAGAGCGATGGCATATGCTTTGACTCACC 808
Query 673 AGTGGCAGGCAGGAACTCGGCAGTTATCTGCTCACAGTGGCTTTCAACCTGACAAAAACA 732
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 809 AGTGGCAGGCAGGAACTCGGCTGTTATCTGCTCACAGTGGCTTTCAACCTGACAAAAACA 868
Query 733 ACTGGGGATGGAACTGGTTGGAAAGATGGATGGCTGTTCGGCCATGGGAGAACCGGTTTC 792
| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 869 ATTGGGGATGGAACTGGTTGGAAAGATGGATGGCAGTGCGTCCATGGGAGAACCGGTTTC 928
Query 793 TTGACAGTAACCTCAGGGATGATGCGAAATTAGGTGAAAACAGCATGGAGCAGTCTGAGA 852
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 929 TTGACAGTAACCTCAGGGATGATGCAAAATTAGGTGAAAACGGCATGGAGCAGTCTGAGA 988
Query 853 ATGTGCCCAAAACGCAGATGAAAAGTGTGAGCAAGATGCCAAACACGTCAAATCTTGTGT 912
|||| || ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |
Sbjct 989 ATGTACCTAAAACGCAGATCAAAAGTGTGAGTAAGATGCCAAACACTTCAAATCTTGTAT 1048
Query 913 CTGGTATTTCAAGTCAGATGACCGGCCCATGTCAGTCGGATGGTAATTCGTCTTCTCCTG 972
| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1049 CCGGTGTTTCAAGTCAGATGACTGGCCCGTGTCAGTCGGATGGTGATTCGTCTTCTCCTG 1108
Query 973 GAATATCTTCAAGCATTCCAGTGGTATCCAAGGCTAAGTCAAAGCCTGCTAAAGATGATC 1032
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1109 GAATATCTTCAAGCATTCCAGTGGTATCCAAGGCTAAGTCAAAGCCAGCTAAAGACGATC 1168
Query 1033 TTGCTGTAGAAGTTAACTCAAGACCTGGTGCTGGTCCAAGATCGCACAGCAATCCGAAAG 1092
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1169 TTGCTGTAGAAGTTAACTCAAGACCTGGTGCTGGTCCAAGATCACACAGCAATCCGAAAG 1228
Query 1093 AAAGATCAAGAGAGCCAAATAGATCGTCAAAGGAACGATTATCTCTGCCAAACAGTGGAA 1152
||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1229 AAAGATCAAGAGAACCAAATCGATCTTCAAAAGAACGATTATCTCTGCCAAACAGCGGAA 1288
Query 1153 AATCCTTAGGATCTCAGTCAGCTAAAGCCAACCGAGCA--AAA-CTCACGCCAACATCTC 1209
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct 1289 AATCCTTAGGATCTCAGTCAACTAAAGCCAACCGAGCAGGAAAACTCACGCCAGCATCTC 1348
Query 1210 AAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGACGCAACTCCGACCCAATAA 1269
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1349 AAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGGCGCAACTCCGACCCAATAA 1408
Query 1270 AACAGAGGCTCGCATAG 1286
|||||||||| ||||||
Sbjct 1409 AACAGAGGCTTGCATAG 1425
> AT3G22183.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr3:7831129-7831371 FORWARD LENGTH=243
Length=243
Score = 165 bits (89), Expect = 1e-39
Identities = 102/108 (94%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 1195 TCACGCCAACATCTCAAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGACGCA 1254
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 243 TCACGCCAGCATCTCAAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGGCGCA 184
Query 1255 ACTCCGACCCAATAAAACAGAGGCTCGCATAGCCTTGT--AAGTGTGT 1300
||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 183 ACTCCGACCCAATAAAACAGAGGCTTGCATAGCCCTGTTTAAGTGTGT 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5