BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930196

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   350    5e-96


> AT3G22210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast 
hits to 26 proteins in 13 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:7838784-7839467 REVERSE 
LENGTH=597
Length=597

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 228/246 (93%), Gaps = 5/246 (2%)
 Strand=Plus/Plus

Query  1    GTTTGGTTC--AG-AGAAGAGAAGAAAATGGAAGGGCTAAGCCATATCGCACTCCCTGTT  57
            |||||||||  || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  10   GTTTGGTTCTGAGAAGAAGAGAAGAAAATGGAAGGGATAAGCCATATCGCACTCCCTGTT  69

Query  58   CTGGGAATTGTTGCGGTCTCTGTCGTAACCTTCTATGCCGTTAGCTTCGCTGAGATCAGA  117
            || ||||| || || ||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct  70   CTTGGAATCGTCGCAGTCTCGGTCGTAACATTCTATGCCGTTAGCTTTGCCGAGATCAGA  129

Query  118  GAGAAATCGTTTAAAGATGTGTACGACTCGGAGAACGAAGTTGGGTTCAAGACTTCTCTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  130  GAGAAATCGTTTAAAGATGTGTACGACTCGGAGAACGAAGTTGGGTTCAAGACTTCTCTA  189

Query  178  AGTTCAAGGGAGAGAAGATCAA-GAAGAGAAGCAAATAAAAAACGTCCTCGATCTTGATT  236
            |||||||||||||||||||||| || |||||||||| ||||||||||||  |||||||||
Sbjct  190  AGTTCAAGGGAGAGAAGATCAAAGA-GAGAAGCAAACAAAAAACGTCCTAAATCTTGATT  248

Query  237  CCAAAA  242
            ||||||
Sbjct  249  CCAAAA  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11561582270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5