BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930199
Length=301
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22231.1 | Symbols: PCC1 | pathogen and circadian controlled... 200 6e-51
AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 200 6e-51
> AT3G22231.1 | Symbols: PCC1 | pathogen and circadian controlled
1 | chr3:7845823-7846605 REVERSE LENGTH=545
Length=545
Score = 200 bits (108), Expect = 6e-51
Identities = 160/183 (87%), Gaps = 12/183 (7%)
Strand=Plus/Plus
Query 2 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGAGCACAATGACTTTTCCGGTACAGTG 61
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||| | |
Sbjct 22 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCG-T---G-- 75
Query 62 CAAAAACCTTCAGAGACTTCATCAGAGTCGTCGTACACAAGTCCTCCGCCGCCAATTGGT 121
||||||||||||||||||||||||| | | ||||||||||||| ||| |||||||||
Sbjct 76 CAAAAACCTTCAGAGACTTCATCAGGG-C--CGTACACAAGTCC---GCCACCAATTGGT 129
Query 122 TATCCGACTAGAGATGCGGTGGTCGGTGATCCTCCGGCAGTAGCAACGGAGACTAAGTCC 181
||||||||||||||||||||||| |||||||||||||||| |||| |||||| || |||
Sbjct 130 TATCCGACTAGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCC 189
Query 182 AAG 184
|||
Sbjct 190 AAG 192
> AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1);
Has 122 Blast hits to 122 proteins in 11 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7854419-7855791
REVERSE LENGTH=670
Length=670
Score = 200 bits (108), Expect = 6e-51
Identities = 160/183 (87%), Gaps = 12/183 (7%)
Strand=Plus/Plus
Query 2 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGAGCACAATGACTTTTCCGGTACAGTG 61
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||| | |
Sbjct 157 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCG-T---G-- 210
Query 62 CAAAAACCTTCAGAGACTTCATCAGAGTCGTCGTACACAAGTCCTCCGCCGCCAATTGGT 121
||||||||||||||||||||||||| | | ||||||||||||| ||| |||||||||
Sbjct 211 CAAAAACCTTCAGAGACTTCATCAGGG-C--CGTACACAAGTCC---GCCACCAATTGGT 264
Query 122 TATCCGACTAGAGATGCGGTGGTCGGTGATCCTCCGGCAGTAGCAACGGAGACTAAGTCC 181
||||||||||||||||||||||| |||||||||||||||| |||| |||||| || |||
Sbjct 265 TATCCGACTAGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCC 324
Query 182 AAG 184
|||
Sbjct 325 AAG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13924166473
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5