BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930200
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22230.1 | Symbols: | Ribosomal L27e protein family | chr3:... 390 3e-108
AT4G15000.1 | Symbols: | Ribosomal L27e protein family | chr4:... 300 6e-81
> AT3G22230.1 | Symbols: | Ribosomal L27e protein family | chr3:7843967-7844597
REVERSE LENGTH=631
Length=631
Score = 390 bits (211), Expect = 3e-108
Identities = 250/268 (93%), Gaps = 6/268 (2%)
Strand=Plus/Plus
Query 22 ATGGTGAAGTTTCTG-A--AGAACAAAGCCGTGATCCTCCTTCAAGGCCGTTACGCCGG- 77
||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 55 ATGGTGAAGTTTCTGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACGCCGGC 114
Query 78 AAAGAAGGCAGTGATCATCAAATCCTTCGACGACGGAACGAGTGACCGTCGTTACGGACA 137
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 115 AAA-AAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGTCGTTACGGACA 173
Query 138 TTGCCTCATCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGACTCAGCGAA 197
|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 174 CTGCCTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCGAA 233
Query 198 GAATACGGCGAAGAAATCTATAGTGAAATGTTTCATCAAGGTCGTGAATTACCAGCATCT 257
||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 234 GAAGACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCAGCATCT 293
Query 258 GATGCCTACTCGTTACACGCTCGA-GTA 284
||||||||| |||||||||||||| |||
Sbjct 294 GATGCCTACACGTTACACGCTCGATGTA 321
> AT4G15000.1 | Symbols: | Ribosomal L27e protein family | chr4:8571833-8572489
FORWARD LENGTH=657
Length=657
Score = 300 bits (162), Expect = 6e-81
Identities = 232/265 (88%), Gaps = 7/265 (3%)
Strand=Plus/Plus
Query 22 ATGGTGAAGTTTC-TG-A--AGAACAAAGCCGTGATCCTCCTTCAAGGCCGTTACGCCGG 77
||||||||| ||| || | ||||||| ||||||||||| |||||||| |||||||||||
Sbjct 64 ATGGTGAAG-TTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGTTACGCCGG 122
Query 78 AAAGAAGGCAGTGATCATCAAATCCTTCGACGACGG-AACGAGTGACCGTCGTTACGGAC 136
|||||| || || ||||||||||||||||||||||| ||| |||| |||| ||||||||
Sbjct 123 AAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAAC-CGTGATCGTCCTTACGGAC 181
Query 137 ATTGCCTCATCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGACTCAGCGA 196
| |||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |
Sbjct 182 ACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCTA 241
Query 197 AGAATACGGCGAAGAAATCTATAGTGAAATGTTTCATCAAGGTCGTGAATTACCAGCATC 256
|||| || || |||||||||| || || |||||||||||| | || |||||||||||||
Sbjct 242 AGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGCATC 301
Query 257 TGATGCCTACTCGTTACACGCTCGA 281
||||||||||||||||||| |||||
Sbjct 302 TGATGCCTACTCGTTACACACTCGA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14225772967
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5