BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930202
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22231.1 | Symbols: PCC1 | pathogen and circadian controlled... 237 4e-62
AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 237 4e-62
> AT3G22231.1 | Symbols: PCC1 | pathogen and circadian controlled
1 | chr3:7845823-7846605 REVERSE LENGTH=545
Length=545
Score = 237 bits (128), Expect = 4e-62
Identities = 160/175 (91%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 3 TCCTCAGCTCCTCAAATCAGAATGACTCAATCCGAGCACAATTACTTTTCCGTGCAAAAA 62
||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 22 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCGTGCAAAAA 81
Query 63 CGTTCACAGATTTCATCAGGGCCGGACACAAGTCCGTCGCCGCCGATTGGTTATCCGACT 122
| |||| ||| ||||||||||||| |||||||| | |||| || |||||||||||||||
Sbjct 82 CCTTCAGAGACTTCATCAGGGCCGTACACAAGT-C--CGCCACCAATTGGTTATCCGACT 138
Query 123 AGAGATCCGGTGGTCGGTGATCCTCCGGCAGCAGCAGTGGAGACAAAGTCCAAGG 177
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 139 AGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCCAAGG 193
> AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1);
Has 122 Blast hits to 122 proteins in 11 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7854419-7855791
REVERSE LENGTH=670
Length=670
Score = 237 bits (128), Expect = 4e-62
Identities = 160/175 (91%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 3 TCCTCAGCTCCTCAAATCAGAATGACTCAATCCGAGCACAATTACTTTTCCGTGCAAAAA 62
||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 157 TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCGTGCAAAAA 216
Query 63 CGTTCACAGATTTCATCAGGGCCGGACACAAGTCCGTCGCCGCCGATTGGTTATCCGACT 122
| |||| ||| ||||||||||||| |||||||| | |||| || |||||||||||||||
Sbjct 217 CCTTCAGAGACTTCATCAGGGCCGTACACAAGT-C--CGCCACCAATTGGTTATCCGACT 273
Query 123 AGAGATCCGGTGGTCGGTGATCCTCCGGCAGCAGCAGTGGAGACAAAGTCCAAGG 177
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 274 AGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCCAAGG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11410779023
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5