BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930212

Length=2362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22320.1 | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukar...  56.5    1e-06


> AT3G22320.1 | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic 
rpb5 RNA polymerase subunit family protein | chr3:7890864-7892347 
REVERSE LENGTH=942
Length=942

 Score = 56.5 bits (30),  Expect = 1e-06
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  2305  CTGGAGAGATACACAGTGAAGGAGACACAG  2334
             ||||||||||||||||||||||||||||||
Sbjct  606   CTGGAGAGATACACAGTGAAGGAGACACAG  635



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 117268473120


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5