BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930239
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22500.1 | Symbols: ATECP31 | Seed maturation protein | chr3... 1258 0.0
AT3G22490.1 | Symbols: | Seed maturation protein | chr3:796968... 741 0.0
> AT3G22500.1 | Symbols: ATECP31 | Seed maturation protein | chr3:7971625-7972907
REVERSE LENGTH=1108
Length=1108
Score = 1258 bits (681), Expect = 0.0
Identities = 771/815 (95%), Gaps = 3/815 (0%)
Strand=Plus/Plus
Query 1 AACA-TAACTTAACAAAACAGAGATGAGCCAAGAGCAACCAAGGAGGCCTAA-AGAGCCA 58
|||| |||| |||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 20 AACATTAACGTAACAAAACAAAGATGAGCCAAGAGCAACCAAGGAGGCC-AAGAGAGCCA 78
Query 59 GTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTAGCTGATAAGCCCATAGCACCC 118
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 79 GTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTCGCTGATAAGCCCATAGCACCT 138
Query 119 GAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAAAGGC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAAAGGC 198
Query 179 GGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGTCCAT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGTCCAT 258
Query 239 CCAGGTGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAACAGTCCCA 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 259 CCAGATGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAACGGTCCCT 318
Query 299 GCTACAACCGTCACAACCGAATTCGTCGCTGGACAGGTGGTCGGACAACATGTTGAACCG 358
||| |||| ||||||||||||||||||| ||||||||| || |||||||| |||||||||
Sbjct 319 GCTGCAACTGTCACAACCGAATTCGTCGGTGGACAGGTCGTTGGACAACACGTTGAACCG 378
Query 359 AGGCGCATAGTCGCTGCAGCACGGACGGACGAAGAAGCTTTGCAAAGTACTATAACGATT 418
||||| |||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 379 AGGCGTGTAGTCGCTGCTGCGCGTACGGACGAAGAAGCTTTGCAAAGTACAATAACGATT 438
Query 419 GGAGAAGCATTAGAAGCGACCGTGAAGACCGCTGGAAACAAACCGGTGGATCAAAGCGAC 478
||||||||| | ||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 439 GGAGAAGCACTGGAAGCAACTGTGAAGACAGCTGGAAACAAACCTGTGGATCAAAGCGAC 498
Query 479 GCAGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTCTAGCA 538
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GCCGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTCTAGCT 558
Query 539 GGAGTCGCCGCTTCAGCTCAATCCGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 559 GGAGTCGCCGCTTCAGCTCAATCTGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG 618
Query 599 AGGAAAATCAAGCTTAGTGATGTTTTAACGGGTGCGGCGGGGAAGTTATCGGCAGATAGA 658
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 619 AGGAAAATCAAGCTTCGTGATGTTTTGACGGGTGCAGCAGGGAAGTTATCGGCAGACAGA 678
Query 659 GCTGTGACGAGGGAGGATGCAGAGGGAGTGGTGAGCGCCGAGATGAGGAATAACCCTAAA 718
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 679 GCTGTGACGAGGGAAGATGCCGAGGGAGTGGTGAGCGCAGAGATGAGGAATAACCCTAAA 738
Query 719 TTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTTACCGTCGCTGCTAGGCTTAACGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTTACCGTCGCTGCTAGGCTTAACGAG 798
Query 779 AGAGTCGATATATGACATGAAAAATCCCGCAAGAG 813
||||| ||||||||||| || |||||| || ||||
Sbjct 799 AGAGTTGATATATGACAAGACAAATCCGGCGAGAG 833
> AT3G22490.1 | Symbols: | Seed maturation protein | chr3:7969681-7970843
REVERSE LENGTH=998
Length=998
Score = 741 bits (401), Expect = 0.0
Identities = 687/821 (84%), Gaps = 36/821 (4%)
Strand=Plus/Plus
Query 1 AACATAACTTAACAAAAC--AGAGATGAGCCAAG-AG--CAACCAAGGAGGCCTA-AAGA 54
|||||||| ||||||||| ||||||||| |||| || ||||||| | |||| | ||||
Sbjct 82 AACATAACATAACAAAACAGAGAGATGAGTCAAGAAGAACAACCAAAGCGGCC-ACAAGA 140
Query 55 GCCAGTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTAGCTGATAAGCCCATAGC 114
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 141 GCCAGTCACTTACGGTGACGTTTTTGAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGC 200
Query 115 ACCCGAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAA 174
|| ||||||||||| ||||||||| | |||||||||| |||||| ||||| ||||||||
Sbjct 201 GCCGGAGGATGCAAACATGATGCAAGCAGCGGAGACACGTGTGTTTGGCCACACTCAGAA 260
Query 175 AGGCGGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGT 234
||||||| |||| || |||||||| ||||||||||| | |||| |||||||||||||||
Sbjct 261 AGGCGGTGCAGCGGCAGTCATGCAGTCTGCAGCCACTGCTAATAAACGCGGTGGCTTTGT 320
Query 235 CCATCCAGGTGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAAC--A 292
|||||||||||||| |||||| || | |||||||||||||| |||||||| |||||| |
Sbjct 321 CCATCCAGGTGACACAACTGATCTCGCCGCTGAACGAGGCGTCACAGTGGCGCAAACTGA 380
Query 293 -GTCCCAGCTACAAC-CGTCACAACCGAATTCGTCGCTGGACAGGTGGTCGGACAACATG 350
||||| | | | || |||||||| |||||||||| ||||||||| || |||||| | |
Sbjct 381 CGTCCCTGGTGC-ACGTGTCACAACAGAATTCGTCGGTGGACAGGTCGTTGGACAATACG 439
Query 351 TTGAACCGAGGCGCA-TAGTCG-CT---GCAGC-ACGG-A-CGGACGAAGAAGCTTT--G 400
| || || |||| || | | || || ||||| | || | | || | | | ||| |
Sbjct 440 TCGAGCCTAGGC-CAGT-GGCGACTGCGGCAGCTATGGAAGCAGAAGTTGTGGGTTTGAG 497
Query 401 ----CAAAGTACTATAACGATTGGAGAAGCATTAGAAGCGACCGTG-AAGACCGCTGGAA 455
|||||| | |||||||||||||||||||| |||||||| ||| || ||||||||||
Sbjct 498 TTTACAAAGTGCAATAACGATTGGAGAAGCATTGGAAGCGACTGTGCAA-ACCGCTGGAA 556
Query 456 ACAAACCGGTGGATCAAAGCGACGCAGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCG 515
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 557 ACAAACCGGTGGATCAAAGCGACGCAGCAGCGATTCAAGCGGCAGAGGTTAGAGCTTGTG 616
Query 516 GTACCAACGTCATTGCTC-TAGCAGGAGTCGCCGCTTCAGCTCAATCCGCAGCGGATCAC 574
| || || || ||||||| | | ||| |||||||||| |||||||| ||||| |||||
Sbjct 617 GCACTAATGTGATTGCTCCTGGT-GGAATCGCCGCTTCTGCTCAATCAGCAGCAAATCAC 675
Query 575 AACGCTACCGTAGATCGTGACGAG-AGGAAAATCAAGCTTAGTGATGTTTTAACGGGTGC 633
||||||||| |||| ||||| ||| | ||||||||||| | ||||||||| |||||||
Sbjct 676 AACGCTACCATAGACCGTGATGAGGAT-AAAATCAAGCTCATTGATGTTTTGGCGGGTGC 734
Query 634 GGCGGGGAAGTTATCGGCAGATAGAGCTGTGACGAGGGAGGATGCAGAGGGAGTGGTGAG 693
| | ||||||||| | ||||||| ||||||||| ||| |||| |||||||||||||||||
Sbjct 735 GACCGGGAAGTTAGCCGCAGATAAAGCTGTGACCAGGCAGGACGCAGAGGGAGTGGTGAG 794
Query 694 CGCCGAGATGAGGAATAACCCTAAATTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCT 753
||| ||| ||||||| || ||||| |||| |||||||||||||||||||||||||||| |
Sbjct 795 CGCTGAGCTGAGGAACAATCCTAATTTGTCTACTCACCCTGGTGGTGTAGCGGCTTCTAT 854
Query 754 TACCGTCGCTGCTAGGCTTAACGAGAGAG-TCGATATATGA 793
||| | ||| ||||||||||||||||||| | |||||||||
Sbjct 855 TACTGCCGCCGCTAGGCTTAACGAGAGAGCT-GATATATGA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5