BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930243

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22540.1 | Symbols:  | Protein of unknown function (DUF1677)...   571    1e-162


> AT3G22540.1 | Symbols:  | Protein of unknown function (DUF1677) 
| chr3:7984076-7984627 REVERSE LENGTH=552
Length=552

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 352/373 (94%), Gaps = 1/373 (0%)
 Strand=Plus/Plus

Query  1    ATAGGCTTTTTTGGTGAAAAATGGAGATTGAATCTGTGAGATGCGAGTGTTGTGGGTTAA  60
            |||||||| ||| ||| ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct  44   ATAGGCTTCTTTAGTG-AAAATGGAGATCGAATCCGTGAGATGTGAGTGTTGTGGGTTAA  102

Query  61   TGGAAGATTGCACACAAGACTACATTAGTGAGGTCAAATCTAACTTCGACAACAAATGGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  103  TGGAAGATTGCACACAAGACTACATTAGTGAGGTCAAATCTAACTTCGACAACAAGTGGC  162

Query  121  TTTGTGGTCTCTGCTCTGAGGCCGTGAGGGACGAAGTAAGTCGCCGGAAGATGACCACCG  180
            | |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct  163  TCTGTGGTCTCTGCTCCGAAGCCGTGAGGGACGAAGTGAGTCGCCGGAAGATGACCACAG  222

Query  181  TTGATGAAGCCGTTAAGGCCCACGTGTCGTTTTGTGGCAAGTTTAAAAAAGATAATCCGG  240
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTGATGAAGCCGTCAAGGCCCACGTGTCGTTTTGTGGCAAGTTTAAAAAAGATAATCCGG  282

Query  241  CGGTTCATGTGGCCGACGGTATGAGGCAAATGCTACGTAGGAGGTCCGGTGACTTGACGA  300
            |||||||||| || || ||||||||||| |||||||| |||||||||||||| |||||||
Sbjct  283  CGGTTCATGTCGCTGATGGTATGAGGCAGATGCTACGGAGGAGGTCCGGTGAGTTGACGA  342

Query  301  CTTCCTCTACGTCCAAGAAGTTTGGTAGATCTAACACCACCAAGTTTTACTGATCCATTT  360
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  343  ATTCCTCTACGTCCAAGAAGTTTGGTAGATCTAACACCACCAAGTTGTACTGATCCATTT  402

Query  361  TTCTTCTATTTCG  373
            |||||||||||||
Sbjct  403  TTCTTCTATTTCG  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5