BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930250
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22630.1 | Symbols: PBD1, PRCGB | 20S proteasome beta subuni... 1018 0.0
> AT3G22630.1 | Symbols: PBD1, PRCGB | 20S proteasome beta subunit
D1 | chr3:8009540-8010844 REVERSE LENGTH=854
Length=854
Score = 1018 bits (551), Expect = 0.0
Identities = 618/651 (95%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 6 GATCTGTATAC-GAAGATGGAGTGTGTATTCGGTCTTGTTGGAAATGGATTCGCTATCGT 64
|||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 55 GATCTGTAGACGGAAGATGGAGTGTGTATTCGGTCTTGTTGGGAATGGATTCGCCATCGT 114
Query 65 TGCTGCTGATACATCGGCGGTTCATAGTATCCTTCTCCACAAAAACAACGAAGACAAGAT 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 115 TGCTGCTGATACATCGGCGGTTCATAGTATCCTTCTTCACAAAAACAACGAAGACAAGAT 174
Query 125 CATGGTTCTTGACTCTCACAAGCTCGTCGCTGCTAGTGGCGAGCCTGGTGACCGGGTTCA 184
|||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 175 CATGGTACTTGACTCACACAAGCTTGTTGCTGCTAGTGGCGAGCCTGGTGACCGGGTTCA 234
Query 185 ATTTACGGAGTACGTTCAGAAGAATGTGTCGTTGTACAAATTCCGTAACGGAATCCCTTT 244
||||||||||||||||||||||||||||| |||||||||||| | || |||||||| ||
Sbjct 235 GTTTACGGAGTACGTTCAGAAGAATGTGTCCTTGTACAAATTCAGAAATGGAATCCCGTT 294
Query 245 GACTACCGCCGCTGCTGCGAATTTCACTCGCGGAGAGCTCGCTACTGCGTTGAGGAAGAA 304
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 295 GACTACCGCCGCTGCTGCCAATTTCACTCGCGGAGAGCTCGCTACTGCTTTGAGGAAGAA 354
Query 305 TCCGTATTCGGTGAATATCCTTATGGCTGGCTATGACAATGAGTCTGGTGCATCCCTTTA 364
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 355 TCCGTATTCGGTGAATATCCTGATGGCTGGCTATGACGATGAGTCTGGTGCATCACTTTA 414
Query 365 CTACATCGACTACATTGCAACTCTTCACAAAGTCGACAAGGGAGCTTTCGGTTACGGATC 424
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 415 CTACATCGACTACATTGCAACTCTTCACAAAGTCGACAAGGGAGCTTTTGGTTACGGCTC 474
Query 425 TTATTTCTCCCTCTCCACGATGGACAGGCATTACCGCAGCGACATGTCTGTAGAAGAAGC 484
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 CTACTTCTCCCTCTCCACGATGGACAGGCATTACCGCAGTGACATGTCTGTAGAAGAAGC 534
Query 485 CATTGAACTGGTTGACAAATGCATACTTGAGATCCGGTCAAGATTGGTCGTTGCGCCGCC 544
||||||||| ||||||||||||||||||||||||||||||||| | || ||||| || ||
Sbjct 535 CATTGAACTAGTTGACAAATGCATACTTGAGATCCGGTCAAGACTCGTTGTTGCACCACC 594
Query 545 AAACTTTGTGATCAAGATTGTTGACAAAGATGGAGCTCGTGATTACGCTTGGCGTCAGTC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAACTTTGTGATCAAGATTGTTGACAAAGATGGAGCTCGTGATTACGCTTGGCGTCAGTC 654
Query 605 CGTAAAGGATGTCACAACTGCTGCTGTCTGAGTTGGTTT-GTGTTTGGTTT 654
||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 655 CGTAAAGGATGTCACAACTGCTGTTGTCTGAGTTGGTTTTGTGTTTGGTTT 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5