BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930258

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein o...   298    2e-80


> AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein 
of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide 
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana 
protein match is: Tetratricopeptide repeat (TPR)-like superfamily 
protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 
14716 proteins in 280 species: Archae - 2; Bacteria - 10; 
Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other 
Eukaryotes - 904 (source: NCBI BLink). | chr3:8021229-8024534 
REVERSE LENGTH=2935
Length=2935

 Score =  298 bits (161),  Expect = 2e-80
 Identities = 201/220 (91%), Gaps = 4/220 (2%)
 Strand=Plus/Plus

Query  20    AATGCCAAAAATAGAAGCAATGCTCGACGAAATTAGCCAAAGAGCGAGTTC-CTTAGGCC  78
             ||||||||| |||||||||||||| || ||| |||| ||||||||||| || ||||||||
Sbjct  2193  AATGCCAAACATAGAAGCAATGCTAGATGAAGTTAGTCAAAGAGCGAG-TCACTTAGGCC  2251

Query  79    ATGTACCTGATCTTGGTAATGTTCTGATGGATGTAGATGAGAAAGAGAAGATCTTTATGC  138
             |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  2252  ATGTACCTGATCTTAGTAATGTTCTTATGGATGTTGATGAGAAAGAGAAGATCTTTATGC  2311

Query  139   TCAGTC-GACACAGCGAGAAACTTGCAGTGGCAAATGGACTCATTAGCTCAAGCAAAGGC  197
             | || | |||||||||||||||||||| ||||  |||||||||||||||||| |||||||
Sbjct  2312  TTAG-CAGACACAGCGAGAAACTTGCAATGGCCTATGGACTCATTAGCTCAAACAAAGGC  2370

Query  198   ACAACAGTCCAAATAGTCAAGAACCTAAGAGTATGCTCTG  237
             |||||| ||| |||||||||||||||||||||||||||||
Sbjct  2371  ACAACAATCCGAATAGTCAAGAACCTAAGAGTATGCTCTG  2410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13320953485


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5