BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930270
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22760.1 | Symbols: SOL1 | Tesmin/TSO1-like CXC domain-conta... 348 2e-95
> AT3G22760.1 | Symbols: SOL1 | Tesmin/TSO1-like CXC domain-containing
protein | chr3:8044455-8047530 FORWARD LENGTH=2146
Length=2146
Score = 348 bits (188), Expect = 2e-95
Identities = 223/240 (93%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 2 GATTGTTTTTGGT-GTTAGAAAATGGATACACCGCAAAAGAGTGTAACCCAGATCGGGAC 60
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||
Sbjct 146 GATTGTTTTTGGTAGTTAGAAAATGGATACACCGGAAAAGAGTGAAACCCAGATCGGTAC 205
Query 61 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAATTACATATGCAGTCTCTC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 206 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAGTTACATATGCAATCTCTC 265
Query 121 ACCAATTAAGACTCTCAAATCAATTCCAATCACTCAAACGTTAAGCTCTCTCAATTTCAC 180
||||||||||||| ||||| |||||||||||||| | |||||||||||||||| | |
Sbjct 266 ACCAATTAAGACTATCAAACCAATTCCAATCACTTGTCCTTTAAGCTCTCTCAATTACGC 325
Query 181 ATCTCCACCTTCTGTTTTCACTTCCCCTCACGCGGTTTCTCATAAAGA-TCTCGTTTCAG 239
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 326 ATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAG 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5