BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930271
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22760.1 | Symbols: SOL1 | Tesmin/TSO1-like CXC domain-conta... 2499 0.0
AT4G14770.1 | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2 | ... 527 2e-148
AT3G22780.1 | Symbols: TSO1, ATTSO1 | Tesmin/TSO1-like CXC doma... 516 4e-145
> AT3G22760.1 | Symbols: SOL1 | Tesmin/TSO1-like CXC domain-containing
protein | chr3:8044455-8047530 FORWARD LENGTH=2146
Length=2146
Score = 2499 bits (1353), Expect = 0.0
Identities = 1738/1915 (91%), Gaps = 61/1915 (3%)
Strand=Plus/Plus
Query 2 GATTGTTTTTGGT-GTTAGAAAATGGATACACCGCAAAAGAGTGTAACCCAGATCGGGAC 60
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||
Sbjct 146 GATTGTTTTTGGTAGTTAGAAAATGGATACACCGGAAAAGAGTGAAACCCAGATCGGTAC 205
Query 61 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAATTACATATGCAGTCTCTC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 206 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAGTTACATATGCAATCTCTC 265
Query 121 ACCAATTAAGACTCTCAAATCAATTCCAATCACTCAAACGTTAAGCTCTCTCAATTTCAC 180
||||||||||||| ||||| |||||||||||||| | |||||||||||||||| | |
Sbjct 266 ACCAATTAAGACTATCAAACCAATTCCAATCACTTGTCCTTTAAGCTCTCTCAATTACGC 325
Query 181 ATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAATCTCGTTTCAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 326 ATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAG 385
Query 241 AAGTCAAAAAGATGGGTCTGCTTCTAAAGAAGTTGCTTCCATTGGAGAAGAAGGAAAAGA 300
|||||||||||||| |||||||||||||||| | || | | | | ||||
Sbjct 386 AAGTCAAAAAGATGTGTCTGCTTCTAAAGAA---G------TT---G--G-A-G--AAGA 427
Query 301 AGAAGCTTTAGTTGAAAATAGCGAACCGGCGCAAAGTC-ACAAGAATGACTGCAATACTC 359
|||||||||||| | ||||||||||| ||||| | |||||||||||||||||||||
Sbjct 428 AGAAGCTTTAGTCG---GTAGCGAACCGGAACAAAG-CTACAAGAATGACTGCAATACTC 483
Query 360 CTAGAGTTAGCGATGATGTGAGAGGCAATGGTTGTTGTGAAGATAGTGGGAAGGATTTGC 419
||||||||| | ||||||||| || ||| || || | |||||||||||||||
Sbjct 484 CTAGAGTTACCAATGATGTGAAAGACAA----TG--GT-----T-GTGGGAAGGATTTGC 531
Query 420 AGAAGATGATGGACAATGTCAAGAAGAAAAGTGATACTCCAGATTGGGAAACTTTGATTT 479
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 AGGTGATGATGGACAATGTCAAGAAGAAAAGTGATACTCCGGATTGGGAAACTTTGATTG 591
Query 480 CTGCTACAACAGAACTAATTTACGGCTCACCGAGGGAGTCAGAGGCTTTTAGTTGCTTGT 539
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 592 CTGCTACAACAGAACTGATTTATGGCTCACCGAGAGAGTCAGAGGCTTTTAGTTGCTTGT 651
Query 540 TGAAGAGAACTTCAAACTCTGAAGCACGTGTACGTGGTGGTACAA-TGCCAACATCAAAG 598
|||||| |||||||||||||||||||||| |||||||| ||| || || ||||||| |
Sbjct 652 TGAAGAAAACTTCAAACTCTGAAGCACGTCTACGTGGTAGTATAACTG-CAACATCGGTG 710
Query 599 CCTGTTTCGAATACCGATGTAGGCAATAATGAATCTGAGTCTCTTGATGCTCTTTCGATC 658
||||| ||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||
Sbjct 711 GCTGTTACGAATACCGATGTAGTCAACAATGAATCTGAATCTGTTGATGCTCTTTCGATA 770
Query 659 TTGCACCGAGGTGTGAGAAGACGGTGTTTAGACTTTGAGATTCCCGGGAATAATCAGCAA 718
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 771 TTGCACCGTGGTGTGAGAAGACGGTGTTTAGACTTTGAGGTTAAGGGGAATAATCAGCAA 830
Query 719 ACATTGGGAGAATCTTCATCGAGTTGTGTGGTACCTAGCATTGGTCTGCATCTTAATGCC 778
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 831 ACATTAGGAGAATCTTCATCTAGTTGTGTAGTACCTAGCATTGGTCTGCATCTTAACACC 890
Query 779 GTTGCAATGCCCTCTAAGGATAACAATGTTGCTAATGAGTACTCATTTTCC-GTAAACAT 837
|||||||| |||||||||| || ||||||||||||||||| ||||||||| || |||||
Sbjct 891 ATTGCAATGTCCTCTAAGGACAAGAATGTTGCTAATGAGTATTCATTTTCCGGT-AACAT 949
Query 838 GAAAGTCGGTTTGCAAAGTTCTAC-CACTCCGCTTCTTCAGTCGCCGCACGAGATTC-TG 895
||||||||| ||||||||||| | |||||| | ||||| |||| |||||| | || ||
Sbjct 950 AAAAGTCGGTGTGCAAAGTTCT-CTGACTCCGGTGCTTCATTCGCAGCACGACA-TCGTG 1007
Query 896 ATAGAAAATGAAACCGGGAAAGATGCTA-GTCAAGTTATAGAAGTGGTTCCAAAGTCTTT 954
| ||||||||||| |||||||||| | | | ||| |||||||||||||||||||||||||
Sbjct 1008 AGAGAAAATGAAAGCGGGAAAGATTC-AGGACAAATTATAGAAGTGGTTCCAAAGTCTTT 1066
Query 955 AGCTTTAGTTGAATTGACTCCAATAAGCCCCAAGAAGAAAAGGCGTAAGTCCGAACAATC 1014
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGCTTCAGTAGACTTGACTCCAATAAGCCCCAAGAAGAAAAGGCGTAAGTCCGAACAATC 1126
Query 1015 AGGAGAAGGCGAGTCCTCATGTAAACGGTGTAACTGCAAAAAATCCAAGTGTTTGAAGCT 1074
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1127 AGGAGAAGGCGACTCGTCATGTAAACGGTGCAACTGCAAAAAATCCAAGTGTTTGAAGCT 1186
Query 1075 TTACTGTGAATGCTTTGCTGCTGGAGTTTATTGCATAGAGCCATGTTCATGTATAGATTG 1134
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1187 TTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCCATGTTCATGTATAAATTG 1246
Query 1135 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCTACTCGTAAACAGATTGAATCCCG 1194
|||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1247 CTTCAACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCG 1306
Query 1195 CAATCCGCTTGCATTTGCTCCTAAAGTCATCAGAAACTCGGATTCCATCATTGAAGTTGG 1254
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1307 CAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCATCATTGAAGTTGG 1366
Query 1255 TGAGGATGCAAGCAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAA 1314
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAA 1426
Query 1315 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGCTGTTCTATAAA 1374
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1427 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGTTGTTCTATAAA 1486
Query 1375 CTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTTTGTTCGAACA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 CTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTTTGTTCGAACA 1546
Query 1435 AGATGAGGAAAACGAAACATCTGGCAAAAGCGGAACAACGAAAACACAACAGAATGTCGA 1494
||||||||| || ||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 1547 AGATGAGGAGAATGAAACATCTGGCACACCCGGAACAAAGAAAACACAACAGAATGTCGA 1606
Query 1495 GTTGTTCAATCCTGCTGCTCAACCTTCAACACCAATGCCAATAAGACAACCACTGGCTCA 1554
||||||||| ||||| |||| ||||||||||||||| ||| | |||||||||||||| ||
Sbjct 1607 GTTGTTCAAACCTGCAGCTCCACCTTCAACACCAATTCCATTTAGACAACCACTGGCGCA 1666
Query 1555 ACTTCCACTCTCATCCAACAACAGACTGCTACCTCCACAGTCTCATTTTCATCATGGAGC 1614
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 ACTTCCAATCTCATCCAACAACAGACTGCTACCTCCACAGTCTCATTTTCATCATGGAGC 1726
Query 1615 TATTGGATCATCTTCCTCAGGGATATACAACATCAGAAAACCAGACATGAGTTTGTTGTC 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TATTGGATCATCTTCCTCAGGGATATACAACATCAGAAAACCAGACATGAGTTTGTTGTC 1786
Query 1675 ACATTCAAGGATTGAGACAATCACAGAAGATATTGATGATGATATGTCCGAGAATCTAAT 1734
|||||||| || |||||||||||||| |||||||||||| || ||| |||||||||||
Sbjct 1787 TCATTCAAGAATCGAGACAATCACAGAGGATATTGATGAT-AT--GTCTGAGAATCTAAT 1843
Query 1735 CCATTCTCCAATAGCTAACATCAATAGTCTATCTCCCAACAGCAAAAGGGTTTCTTTGGC 1794
||||||||||||| ||| | || || ||| | || ||||||||||||||||| ||| |
Sbjct 1844 CCATTCTCCAATAACTA-C-TC--TA-TCT--C-CC-AACAGCAAAAGGGTTTCGTTGTC 1894
Query 1795 TCATCTTGATTCATCAGAGTCGTCTCCATGGAGAAGAACTGGTGGC---AGGAATCTGAT 1851
||||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||
Sbjct 1895 TCATCTTGATTCACCAGAGTCGACTCCATGGAGAAGAAATGGTGGGGGGAGGAATCTGAT 1954
Query 1852 ACGTTCGTTTCCAACGTTTCCTTCTCTCACTCCACACCATTAAAATTCTTTGAAT 1906
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 ACGTTCGTTCCCAACGTTTCCTTCTCTCACTCCACACCATTAAAATTCTTTGAAT 2009
> AT4G14770.1 | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2
| chr4:8481370-8484825 REVERSE LENGTH=2177
Length=2177
Score = 527 bits (285), Expect = 2e-148
Identities = 763/976 (78%), Gaps = 103/976 (11%)
Strand=Plus/Plus
Query 980 AGCCCCAAGAAGAAAAGGCG-TAAGTCCGAACAATCAGGAGAAGGCGAGTCCTCATGTAA 1038
||||| |||||||| ||| | ||||| | | || |||||||||||| || |||||
Sbjct 1072 AGCCCTAAGAAGAAGAGG-GTTAAGT-TG--GATTCTGGAGAAGGCGAG---TCGTGTAA 1124
Query 1039 ACGGTGTAACTGCAAAAAATCCAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGG 1098
|| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1125 GCGATGCAACTGCAAAAAGTCCAAGTGTTTGAAACTTTACTGTGAATGCTTTGCTGCTGG 1184
Query 1099 AGTTTATTGCATAGAGCCATGTTCATGTATAGATTGCTTCAATAAACCTATCCATGAAGA 1158
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1185 AGTCTATTGCATAGAGCCATGTTCATGTATAGACTGCTTCAATAAACCTATCCATGAAGA 1244
Query 1159 CGTTGTCCTGGCTACTCGTAAACAGATTGAATCCCGCAATCCGCTTGCATTTGCTCCTAA 1218
|||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||
Sbjct 1245 CGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCGGAATCCACTTGCATTTGCTCCTAA 1304
Query 1219 AGTCATCAGAAACTCGGATTCCA--TCATTGAAGTTGGTGAGGATGCAAGCAAAACTCCA 1276
|||||| || ||||| || | || ||| ||| || || ||||||||||||||||||
Sbjct 1305 AGTCATTAGGAACTCTGACT-CAGTTCA-AGAAACCGGGGATGATGCAAGCAAAACTCCA 1362
Query 1277 GCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAAATCAAACTGTCTGAAGAAATAC 1336
||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1363 GCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAAATCAAACTGTCTGAAGAAATAC 1422
Query 1337 TGTGAATGCTATCAGGGCGGAGTTGGCTGTTCTATAAACTGTAGATGTGAAGGATGTAAA 1396
||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 1423 TGTGAATGCTATCAGGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAG 1482
Query 1397 AATGCATTTGGCAGAAAAGATGGGTCTT---T-GT--T-----C-GAACAAGATGAGGAA 1444
|| ||||| ||| | ||||||||||||| | | | | |||||||| ||||||
Sbjct 1483 AACGCATTCGGCCGGAAAGATGGGTCTTCCATTGACATGGAAGCCGAACAAGAAGAGGAA 1542
Query 1445 AACGAAACATCTG-GCAAAAGCGGAACAACGAAAA-CACAACAGAATG-TCGAG-TTGT- 1499
|| |||||||||| | |||||| ||||| | |||| | ||||| || | ||| || |
Sbjct 1543 AATGAAACATCTGAG-AAAAGCAGAACAGCCAAAAGC-CAACAAAACACT-GAGGTTTTA 1599
Query 1500 -TCA-ATC---C-TG----CTGCTCAACCTTCAACACCAATGCCAAT--A-AGACAACCA 1546
| | | | || |||||| |||| | ||||||| ||| || | |||| | |
Sbjct 1600 ATGAGAAAGGACATGAGTTCTGCTCTACCTACGACACCAACGCCGATTTACAGACCAGAA 1659
Query 1547 CTGGCTCAACTTCCACTCTCATC--C-AACAACAG-ACTGC-TACCTCCACAGTCTCATT 1601
|||| |||||| || ||||||| | || ||||| | ||| | ||||||||||||| ||
Sbjct 1660 CTGGTTCAACTACCTTTCTCATCATCTAAGAACAGGA-TGCCT-CCTCCACAGTCTC-TT 1716
Query 1602 TTCATCATGGAGCTATTGGATCATCTTCCTCAGGGATAT--A-CAA-CA-T--C-A-GAA 1652
| | ||||| | ||||| | | |||||||||||| | || || | | | |||
Sbjct 1717 --C-T--TGGAGGT---GGATC-T-T-CCTCAGGGATATTTAACAGTCAATATCTAAGAA 1765
Query 1653 AACCAGACATGAGTTTGT-TG--TC-ACATTCAAG--G--ATT-GAGACAATCACAGAAG 1703
|||||||||| ||||||| | || | | || || | ||| |||||| || ||| |
Sbjct 1766 AACCAGACATTAGTTTGTCTCAATCCAGAATCGAGAAGTCATTCGAGACAGTCGCAGTTG 1825
Query 1704 ATATTGATGATGATATGTCC-GAGAATCTAATCCATTCTCCAATAGCTAACATCAATAGT 1762
|| | ||| | ||| || |||| ||| |||||||| || ||| |||||||||| |||
Sbjct 1826 ATGGAGCTGAACAAATG-CCTGAGATTCTCATCCATTCCCCTATACCTAACATCAAGAGT 1884
Query 1763 CTATCTCCCAACAGCAAA-AGGGTTTCTT-TGGCTCATCTTGATTCATC-AGAGTC-GTC 1818
| ||||||||| | ||| ||||| ||| | ||||| | || ||||| || || | |
Sbjct 1885 GTCTCTCCCAACGG-AAAGAGGGTCTCTCCTC-CTCATATGGAATCATCTAGC-TCAGGC 1941
Query 1819 TCCAT----GG-AGAAGAACTGGTGG-CAGGAATCTGATA---C-GTTCGTTTCCAACGT 1868
|| || || ||||||| ||| || | |||| |||||| | || || ||||| |||
Sbjct 1942 TCAATCTTAGGGAGAAGAAATGGCGGGC-GGAAACTGATATTGCAGT-CGATTCCATCGT 1999
Query 1869 TTCCTTCTCTCACTCC 1884
||||||||||||||||
Sbjct 2000 TTCCTTCTCTCACTCC 2015
> AT3G22780.1 | Symbols: TSO1, ATTSO1 | Tesmin/TSO1-like CXC domain-containing
protein | chr3:8048802-8052260 FORWARD LENGTH=2415
Length=2415
Score = 516 bits (279), Expect = 4e-145
Identities = 389/442 (88%), Gaps = 7/442 (2%)
Strand=Plus/Plus
Query 986 AAGAAGAAA-AGGCGTAAGTCCGAACAATCAGGAGAAGGCGAGTCCTCATGTAAACGGTG 1044
||||| ||| | |||||| || |||||| | || || || ||| ||||||||||| ||
Sbjct 1278 AAGAA-AAAGATGCGTAAATCTGAACAAGCTGGGGAGGGTGAG---TCATGTAAACGATG 1333
Query 1045 TAACTGCAAAAAATCCAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGAGTTTA 1104
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1334 CAACTGCAAAAAGTCTAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGGGTTTA 1393
Query 1105 TTGCATAGAGCCATGTTCATGTATAGATTGCTTCAATAAACCTATCCATGAAGACGTTGT 1164
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1394 TTGCATAGAGCCATGTTCATGTATAGATTGCTTCAACAAACCTATCCATGAAGAAACTGT 1453
Query 1165 CCTGGCTACTCGTAAACAGATTGAATCCCGCAATCCGCTTGCATTTGCTCCTAAAGTCAT 1224
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1454 TTTGGCTACCCGCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCAT 1513
Query 1225 CAGAAACT-CGGATTCCATCATTGAAGTTGGTGAGGATGCAAGCAAAACTCCAGCTTCAG 1283
|||||| | | ||||||||||| |||| | |||| ||||| || ||||| || ||||| |
Sbjct 1514 CAGAAA-TGCAGATTCCATCATGGAAGCTAGTGATGATGCCAGTAAAACCCCGGCTTCTG 1572
Query 1284 CGCGACACAAACGAGGCTGTAACTGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAAT 1343
| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1573 CACGACACAAACGTGGCTGCAACTGCAAGAAATCAAACTGTATGAAGAAATACTGTGAAT 1632
Query 1344 GCTATCAGGGCGGAGTTGGCTGTTCTATAAACTGTAGATGTGAAGGATGTAAAAATGCAT 1403
|||||||||| ||||| |||||||| || ||||||||||| |||||||| | ||||| ||
Sbjct 1633 GCTATCAGGGTGGAGTCGGCTGTTCCATGAACTGTAGATGCGAAGGATGCACAAATGTAT 1692
Query 1404 TTGGCAGAAAAGATGGGTCTTT 1425
| ||||||||||||||||||||
Sbjct 1693 TCGGCAGAAAAGATGGGTCTTT 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94828829505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5