BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930274
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22800.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1653 0.0
AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen... 263 4e-69
> AT3G22800.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:8062888-8064556 REVERSE LENGTH=1669
Length=1669
Score = 1653 bits (895), Expect = 0.0
Identities = 1016/1073 (95%), Gaps = 13/1073 (1%)
Strand=Plus/Plus
Query 248 AGCTTTCACCTATGATACTCCTCCCATAAACCCGTGCTATGCACATGC-TCCTTTTCTTC 306
|||||||||||| |||||||||| ||||||||||||| | | | | | |||||||||||
Sbjct 156 AGCTTTCACCTACCATACTCCTCCAATAAACCCGTGCT-T-CGC-T-CATCCTTTTCTTC 211
Query 307 CTCCTATCGCAAACCCTAGGCTCTTAAAAGCTTAT-GCAGCTCTTCAAGCTTGGAAGTTC 365
|||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 212 CTCCTATCACAAACCCGAGGCTCTTAAAAGCTT-TCACAGCTCTTCAAGCTTGGAAGTTC 270
Query 366 ACCATAACTTCTGACCCAAACGGCTTCACTTCTAACTGGTGTGGTCCTCATGTTTGTAAC 425
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 271 ACCATAACCTCTGACCCAAACGGCTTCACTTCTAACTGGTGCGGTCCTAATGTTTGTAAC 330
Query 426 TACACAGGCGTGTATTGTGCACCGGCTTTAGATAACCCTTATGTCTTAACCGTCGCTGGT 485
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 331 TACACAGGCGTGTTTTGTGCACCGGCTCTAGATAACCCTTATGTCTTAACCGTCGCTGGT 390
Query 486 ATAGACTTAAACCATGCCAATATCGCCGGGTATCTCCCTATAGAGCTCGGTCTCTTAACC 545
|||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 391 ATAGACTTGAACCATGCTAATATCGCCGGTTATCTCCCTTTAGAGCTTGGTCTCTTAACC 450
Query 546 GATCTTGCCTTGTTCCATATCAACTCCAACCGTTTTCAAGGTCAACTTCCCAAAACTCTA 605
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 451 GATCTTGCCTTGTTCCATATCAATTCCAACCGTTTTCAAGGTCAACTTCCCAAAACTCTA 510
Query 606 AAATGTCTCGAGCTTCTCCATGAGCTTGACGTCAGCAACAATAAACTCTCCGGCGAGTTT 665
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AAATGTCTCCATCTTCTCCATGAGCTTGACGTCAGCAACAATAAACTCTCCGGCGAGTTT 570
Query 666 CCTTCAGTAATCTTCTCTTTGCCTTCCTTGAAGTTTCTCGACATTAGGTTCAATGAGTTC 725
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CCTTCCGTAATCTTCTCTTTGCCTTCCTTGAAGTTTCTCGACATTAGGTTCAATGAGTTC 630
Query 726 CAAGGAGATGTTCCTGA-CCAACTCTTTGACCTAAACCTTGACGCTCTCTTCATTAACGA 784
||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 631 CAAGGTGATGTTCCT-AGCCAACTCTTTGACCTAAACCTCGACGCTCTCTTCATTAACGA 689
Query 785 CAACAAGTTCCAGTTTAGGTTACCGAAAAACATTGGAAACTCTCCGGTTTCGGTTCTTGT 844
|||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 690 CAACAAATTCCAGTTTAGGTTACCGAGAAACATCGGAAACTCTCCGGTTTCTGTTCTTGT 749
Query 845 CTTGGCCAACATCGATCTCCAAGGATCTTGTGTACCTCCGAGTTTCTACAAAATGGGGAA 904
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 750 CTTGGCCAACAACGATCTCCAAGGATCTTGTGTACCTCCAAGTTTCTACAAAATGGGGAA 809
Query 905 AACATTGCACGAACTCATTATCTCCAACTCACAGA-TAACCGGTTGTTTAAACCGGGAAA 963
|||||| |||||| |||||||| | |||||||| | ||||||||||||||||||||||||
Sbjct 810 AACATTACACGAAATCATTATCACGAACTCACA-ACTAACCGGTTGTTTAAACCGGGAAA 868
Query 964 TCGGTATG-TTAAACCAGTTGACGGTTTTTGACGTGAGTTACAACAACTTGGTGGGTTCG 1022
||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 869 TCGGTTTGCTT-AACCAGTTGACGGTTTTCGACGTGAGTTACAACAACTTGGTGGGTTCG 927
Query 1023 TTACCGGAGACTATAGGTGATATGAAGAGTTTGGAGCAGTTAAACATCGCGCATAACAAA 1082
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 928 TTGCCGGAGACTATAGGTGATATGAAGAGTTTAGAGCAGTTAAACATTGCGCATAACAAA 987
Query 1083 TTTTCCGGCTACATTCCGGAGAGTATCTGCCGATTACCAAGCCTCGAGAACTTCACTTAC 1142
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 988 TTCTCCGGCTACATTCCGGAGAGTATCTGCCGATTACCAAGGCTCGAGAACTTCACTTAC 1047
Query 1143 TCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGTCTGAGGCTTCAAGAGTTTGATGAT 1202
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1048 TCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGTTTGAGGCTTCAAGAGTTTGATGAT 1107
Query 1203 CGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGGTCTCTCGCTGAATGTAAATCTTTT 1262
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1108 CGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGGTCTCTCGCTGAATGCAAATCCTTT 1167
Query 1263 TCTTCTTATCCTATTGATTGTGCATCCTTCGGCTGCTCTCCACCTAGTCCACC 1315
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1168 TCTTCTTATCCTATTGATTGTGCATCCTTTGGCTGCTCTCCACCTAGTCCACC 1220
> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene)
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797
Score = 263 bits (142), Expect = 4e-69
Identities = 181/200 (91%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 21 ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCAAAGAA 80
||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
Query 81 CCAGCCGTCG-TAAGTTTGATTCTTGAATGTTCTCCGGTCATCGTCTCCGCTCAACTCCA 139
|||||||| | ||| ||| ||||| |||||| |||||||||| || ||||||||||||||
Sbjct 141 CCAGCCGTTGTTAA-TTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCCA 199
Query 140 CGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGAA 199
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 200 CGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACAA 259
Query 200 TGGAGTAATCAACGGCAAGA 219
|||| ||||||| |||||||
Sbjct 260 TGGATTAATCAATGGCAAGA 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5