BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930279

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22840.1 | Symbols: ELIP1, ELIP | Chlorophyll A-B binding fa...   569    8e-162


> AT3G22840.1 | Symbols: ELIP1, ELIP | Chlorophyll A-B binding 
family protein | chr3:8084447-8085560 REVERSE LENGTH=884
Length=884

 Score =  569 bits (308),  Expect = 8e-162
 Identities = 353/375 (94%), Gaps = 2/375 (1%)
 Strand=Plus/Plus

Query  205  CTCCTCCTCCTACT-AAACCTAAGGTGAGCACGAAGTTTAGCGATTTGCTAGCGTTCAGC  263
            |||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct  336  CTCCTCCTCCTA-TGAAACCTAAGGTGAGCACAAAGTTTAGCGACTTGCTAGCGTTTAGC  394

Query  264  GGTCCAGCACCAGAGAGGATTAACGGACGCTTAGCTATGGTTGGATTCGTTGCGGCGTTG  323
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  395  GGTCCAGCACCAGAGAGGATTAACGGACGTTTAGCGATGGTTGGATTCGTTGCGGCGTTG  454

Query  324  GCTGTTGAGCTATCTAAGGGTGAAAACGTATTCGCTCAGATCTCCGACGGTGGCGTCTCA  383
            ||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct  455  GCTGTCGAGCTATCCAAGGGTGAAAACGTTTTAGCTCAGATCTCCGACGGTGGCGTCTCA  514

Query  384  TGGTTCCTCGGTACGACGGCGATCTTGACACTTGCGTCGCTTGTGCCACTTTTCAAGGGC  443
            |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  515  TGGTTCCTCGGTACAACAGCGATCTTGACACTTGCGTCGCTTGTGCCGCTTTTCAAGGGC  574

Query  444  ATAACCGCCGAGTCCAAGTCCGATGGTATCATGACTTCAGACGCTGAGCTTTGGAACGGA  503
            |||| ||  |||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct  575  ATAAGCGTTGAGTCCAAGTCCAAAGGTATCATGACGTCAGACGCTGAGCTTTGGAACGGA  634

Query  504  CGTTTCGCCATGCTCGGTTTGGTCGCGTTGGCGTTCACTGAGTTCGTCAAGGGTGGGACA  563
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  635  CGTTTCGCGATGCTCGGTTTGGTCGCGTTGGCGTTCACTGAGTTCGTCAAAGGTGGGACA  694

Query  564  CTCGTCTAAGGaaaa  578
            |||||||||||||||
Sbjct  695  CTCGTCTAAGGAAAA  709


 Score =  274 bits (148),  Expect = 7e-73
 Identities = 179/194 (92%), Gaps = 2/194 (1%)
 Strand=Plus/Plus

Query  1    AGTAGTAATCAGCTTTAGAAATGGCAACAGCATCGTTCAACATGCAATCAGTCTTCGCCG  60
            ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  96   AGTAGTTCTAAGCTTTAGAAATGGCAACAGCATCGTTCAACATGCAATCAGTCTTCGCCG  155

Query  61   GTGGATTGACCACTCGCAAGATCAACACCAACAAGCTTTTCTTCGCCGGAACCTTCCCTA  120
            ||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct  156  GTGGATTAACCACTCGCAAGATCAACACCAACAAGCTTTTCTCCGCCGGTAGCTTCCCTA  215

Query  121  GTCTCAAGAGGAATTATCCGGTGGGAGTGAGATGCATGGCTGAGGGAG-AGCCCAAAAAC  179
              |||||||||||||||||||||||||||||||||||||||||||||| | ||||  || 
Sbjct  216  ACCTCAAGAGGAATTATCCGGTGGGAGTGAGATGCATGGCTGAGGGAGGA-CCCACGAAT  274

Query  180  GAAGACTCTGCACC  193
            ||||||||| ||||
Sbjct  275  GAAGACTCTTCACC  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28482761349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5