BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930281
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22850.1 | Symbols: | Aluminium induced protein with YGL an... 1253 0.0
> AT3G22850.1 | Symbols: | Aluminium induced protein with YGL
and LRDR motifs | chr3:8089003-8090470 FORWARD LENGTH=1006
Length=1006
Score = 1253 bits (678), Expect = 0.0
Identities = 739/769 (96%), Gaps = 2/769 (0%)
Strand=Plus/Plus
Query 1 CGTGATCGGGAAGAAG-A-AAAATGTTGGCGATTTTCGACAAGAACGTAGCGAAAACACC 58
|||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 43 CGTGATCGGGAAGAAGAAGAAAATGTTGGCGATTTTCGACAAGAACGTGGCGAAAACACC 102
Query 59 CGAGGCTCTGCAGAGTCAAGAGGGTGGATCTGTTTGTGCTCTTAAAGATAGGTTCTTGCC 118
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 103 CGAGGCTCTTCAGGGTCAAGAGGGTGGATCGGTTTGTGCTCTTAAAGATAGGTTCTTGCC 162
Query 119 GAACCATTTCTCCTCTGTTTATCCTGACGCTGTCACCATCAATCTTGGATCTTCTGGTTT 178
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 163 GAACCATTTCTCCTCTGTTTATCCTGGTGCTGTCACCATCAATCTCGGATCTTCTGGTTT 222
Query 179 CATCGCTTGCTCTCTCGAGAAACAGAACCCTCTTCTTCCCAGATTGTTTGCTGTGGTGGA 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CATTGCTTGCTCTCTCGAGAAACAGAACCCTCTTCTTCCCAGATTGTTTGCTGTGGTGGA 282
Query 239 TGATATGTTCTGCATTTTCCAAGGACATATAGAGAACGTTCCAATTCTTAAGCAACAATA 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TGATATGTTCTGCATATTCCAAGGACATATAGAGAACGTTCCAATTCTTAAGCAACAATA 342
Query 299 TGGACTAACCAAAACAGCCACAGAAGTTACCATTGTGATTGAAGCCTATAGAACTCTAAG 358
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 343 TGGACTAACCAAAACAGCTACAGAGGTTACCATTGTGATTGAAGCCTACAGAACTCTAAG 402
Query 359 AGATCGTGGTCCGTATTCTGCTGACCAAGTTGTTAGAGATTTTCATGGCAAATTCGCGTT 418
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||
Sbjct 403 AGATCGTGGTCCGTATTCAGCTGAACAAGTTGTTAGAGATTTTCAAGGCAAATTCGGGTT 462
Query 419 TATGCTCTATGACTGCTCCACACAAAATGTCTTCCTTGCTGGGGATGTAGATGGGAGTGT 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 463 TATGCTCTATGACTGCTCCACACAAAATGTCTTCCTTGCCGGGGATGTAGATGGGAGTGT 522
Query 479 TCCTCTTTACTGGGGTACCGATGCTGAAGGCCATCTTGTTGTTTCTGATGAAGTAGAGAC 538
|||||| |||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 523 TCCTCTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGAC 582
Query 539 TGTCAAGAAAGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGGATGTTTCTTTACCTC 598
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGGATGTTTCTTTACCTC 642
Query 599 ATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAACGAGTTAAAGCCGGTACCAAGGGT 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 643 ATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGT 702
Query 659 AGACAGTTCGGGTGAGGTGTGCGGTGTAACTTTTAAAGTGGATTCCGAGGCCAAGAAAGA 718
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 703 AGACAGTTCGGGTGAGGTTTGCGGTGTAACGTTTAAAGTGGATTCTGAGGCCAAGAAAGA 762
Query 719 AGCGATGCCTAGGGTTGGGAGTGTCCAGAATTGGTCTAAACAAATCTGA 767
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 763 AGCGATGCCTAGGGTTGGGAGTGTTCAGAATTGGTCTAAACAAATCTGA 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5