BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930286
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-term... 841 0.0
> AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-terminal
domain | chr3:8115177-8116253 FORWARD LENGTH=712
Length=712
Score = 841 bits (455), Expect = 0.0
Identities = 525/559 (94%), Gaps = 4/559 (1%)
Strand=Plus/Plus
Query 12 GGCTGAAGAAAATGTTCATCAAAGTCAAATTGCCATGGGATGTTACAATTCCAGCTGAAG 71
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 93 GGCTGAAGAAAATGTTCATCAAAGTGAAATTGCCATGGGATGTTACGATTCCAGCTGAAG 152
Query 72 ATATGGACACTGGCCTTATGCTCCAGAGAGCTATTGTCATTCGCCTACTCGAAGCCTTTG 131
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 153 ATATGGACACTGGCCTTATGCTTCAGAGAGCTATTGTCATTCGTCTACTCGAAGCCTTTT 212
Query 132 GTACCA-AGAAAGCAACAAAAGATCTTGGATACTTGATAACACCCACAATTCTTGAGAAC 190
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 213 CTA-AAGAGAAAGCAACAAAAGATCTTGGATACTTGATAACACCGACAATTCTTGAGAAC 271
Query 191 ATCGGTGAGGGTAAGATCAAGGAACAGACAGGCGAAATTCAATTTCCCGTAGTTTTCAAC 250
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 272 ATCGGTGAGGGTAAGATCAAGGAACAGACCGGCGAAATTCAGTTTCCCGTAGTTTTTAAC 331
Query 251 GGAATCTGCTTCAAGATGTTTAAAGGAGAGGTTGTTCATGGTGTGGTGCAAAAGGTGCAC 310
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 332 GGAATCTGCTTCAAGATGTTTAAAGGAGAGATTGTTCATGGTGTGGTGCACAAGGTTCAC 391
Query 311 AAGAGC-GGAGTCTTTTTGAGATCTGGCCCTTATGAAATCATTTACCTATCACACTTGAA 369
|||| | || |||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 392 AAGA-CTGGTGTCTTTTTGAAATCTGGCCCTTATGAAATCATTTACCTATCACACATGAA 450
Query 370 AATGCCCGGTTACGAGTTCATTCCAGGAGAGAAACCGATTTTCATGAATCAGAACATGTC 429
|||||| |||||||||||||||||||| ||||| ||| |||||||||||||| |||||||
Sbjct 451 AATGCCTGGTTACGAGTTCATTCCAGGCGAGAACCCGTTTTTCATGAATCAGTACATGTC 510
Query 430 CCGGATTCAAATCGGCACCAGAGTTCGTTTCATCGTGTTAGATACCGAGTGGAGAGAGGC 489
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 511 CCGGATTCAAATCGGTGCCAGAGTTCGTTTCGTCGTGTTAGATACCGAGTGGAGAGAGGC 570
Query 490 AGAGAAAGACTTCATGGCTTTGGCCAGCATCGACGGAGACAATCTTGGCCCGTTCTAAAA 549
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 571 AGAGAAAGACTTCATGGCTTTGGCTAGCATCGATGGAGACAATCTTGGTCCGTTCTAAAA 630
Query 550 AGATTCTAATCTGAATTTT 568
||||| |||||| ||||||
Sbjct 631 AGATTGTAATCTTAATTTT 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5