BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930286 Length=568 Score E Sequences producing significant alignments: (Bits) Value AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-term... 841 0.0 > AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-terminal domain | chr3:8115177-8116253 FORWARD LENGTH=712 Length=712 Score = 841 bits (455), Expect = 0.0 Identities = 525/559 (94%), Gaps = 4/559 (1%) Strand=Plus/Plus Query 12 GGCTGAAGAAAATGTTCATCAAAGTCAAATTGCCATGGGATGTTACAATTCCAGCTGAAG 71 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 93 GGCTGAAGAAAATGTTCATCAAAGTGAAATTGCCATGGGATGTTACGATTCCAGCTGAAG 152 Query 72 ATATGGACACTGGCCTTATGCTCCAGAGAGCTATTGTCATTCGCCTACTCGAAGCCTTTG 131 |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 153 ATATGGACACTGGCCTTATGCTTCAGAGAGCTATTGTCATTCGTCTACTCGAAGCCTTTT 212 Query 132 GTACCA-AGAAAGCAACAAAAGATCTTGGATACTTGATAACACCCACAATTCTTGAGAAC 190 || | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 213 CTA-AAGAGAAAGCAACAAAAGATCTTGGATACTTGATAACACCGACAATTCTTGAGAAC 271 Query 191 ATCGGTGAGGGTAAGATCAAGGAACAGACAGGCGAAATTCAATTTCCCGTAGTTTTCAAC 250 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 272 ATCGGTGAGGGTAAGATCAAGGAACAGACCGGCGAAATTCAGTTTCCCGTAGTTTTTAAC 331 Query 251 GGAATCTGCTTCAAGATGTTTAAAGGAGAGGTTGTTCATGGTGTGGTGCAAAAGGTGCAC 310 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 332 GGAATCTGCTTCAAGATGTTTAAAGGAGAGATTGTTCATGGTGTGGTGCACAAGGTTCAC 391 Query 311 AAGAGC-GGAGTCTTTTTGAGATCTGGCCCTTATGAAATCATTTACCTATCACACTTGAA 369 |||| | || |||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 392 AAGA-CTGGTGTCTTTTTGAAATCTGGCCCTTATGAAATCATTTACCTATCACACATGAA 450 Query 370 AATGCCCGGTTACGAGTTCATTCCAGGAGAGAAACCGATTTTCATGAATCAGAACATGTC 429 |||||| |||||||||||||||||||| ||||| ||| |||||||||||||| ||||||| Sbjct 451 AATGCCTGGTTACGAGTTCATTCCAGGCGAGAACCCGTTTTTCATGAATCAGTACATGTC 510 Query 430 CCGGATTCAAATCGGCACCAGAGTTCGTTTCATCGTGTTAGATACCGAGTGGAGAGAGGC 489 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 511 CCGGATTCAAATCGGTGCCAGAGTTCGTTTCGTCGTGTTAGATACCGAGTGGAGAGAGGC 570 Query 490 AGAGAAAGACTTCATGGCTTTGGCCAGCATCGACGGAGACAATCTTGGCCCGTTCTAAAA 549 |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 571 AGAGAAAGACTTCATGGCTTTGGCTAGCATCGATGGAGACAATCTTGGTCCGTTCTAAAA 630 Query 550 AGATTCTAATCTGAATTTT 568 ||||| |||||| |||||| Sbjct 631 AGATTGTAATCTTAATTTT 649 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27277141821 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5