BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930294
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22950.1 | Symbols: ATARFC1, ARFC1 | ADP-ribosylation factor... 933 0.0
> AT3G22950.1 | Symbols: ATARFC1, ARFC1 | ADP-ribosylation factor
C1 | chr3:8136182-8138084 REVERSE LENGTH=989
Length=989
Score = 933 bits (505), Expect = 0.0
Identities = 546/566 (96%), Gaps = 2/566 (0%)
Strand=Plus/Plus
Query 14 GAGAGAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 73
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GAG-GAGATGGGAGCATTCATGTCGAGGTTTTGGTTCATGATGTTTCCTGCAAAAGAGTA 308
Query 74 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TAAGATTGTTGTTGTTGGTTTGGATAATGCTGGTAAAACGACGACGCTTTATAAACTTCA 368
Query 134 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGGAGCAATGTTGAAGAGCTTGTTTA 193
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 369 TTTGGGTGAAGTTGTTACTACTCATCCTACTGTTGGTAGCAATGTTGAAGAGCTTGTCTA 428
Query 194 CAAGAATATCCGCTTCGAGGTTTGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 253
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 429 CAAGAATATTCGCTTTGAGGTATGGGATCTTGGTGGGCAAGATAGGCTAAGAACTTCATG 488
Query 254 GGCAACATACTATCGCGGAACACATGCTGTGATTGTGGTTATCGATAGCACAGACAGAGC 313
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 489 GGCAACATACTATCGTGGAACACATGCTGTGATTGTGGTTATAGATAGCACAGACAGAGC 548
Query 314 CAGAATCTCTTTCATGAAAGATGAGTTCGCCAGGTTACTTGGTCACGAGGATCTTCAAAA 373
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 549 CAGAATCTCTTTCATGAAAGATGAGCTAGCCAGGTTACTTGGTCATGAGGATCTTCAAAA 608
Query 374 CTCGGTCATACTTGTGTTTGCAAACAAACAGGATCTGAAAGATGCGATGACTCCTGCTGA 433
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 609 CTCGGTCATACTAGTTTTTGCAAACAAACAGGATCTGAAAGACGCAATGACTCCTGCTGA 668
Query 434 GATCACGGATGCACTTAACCTTCACAGTATTAAGAACCATGATTGGCATATTCAAGCAAG 493
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 669 GATCACGGATGCACTTAACCTTCACAGTATCAAGAACCATGATTGGCATATTCAAGCAAG 728
Query 494 TTGTGCAGTTACTGGAGAAGGATTGTACGATGGGCTTGGTTGGATTGCCCAAAAAGTTAC 553
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 729 TTGTGCGGTTACTGGAGAAGGATTGTATGATGGGCTCGGTTGGATTGCCCAAAAAGTTAC 788
Query 554 CGGTAAAGCCACGAGTTAAGGG-AAA 578
|||||||||||||||||||||| |||
Sbjct 789 CGGTAAAGCCACGAGTTAAGGGGAAA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28482761349
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5