BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930296
Length=253
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 139 1e-32
> AT1G66790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50674.1);
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24918012-24918356
REVERSE LENGTH=183
Length=183
Score = 139 bits (75), Expect = 1e-32
Identities = 129/154 (84%), Gaps = 7/154 (5%)
Strand=Plus/Plus
Query 57 GACGGTGGGGACGGAGACGATGAAGATG-CTG-ATGTTAAGTG-TGGATTTGTTCCACAG 113
|||||||| | | | |||| ||||||| | | |||||||| | |||| || | ||
Sbjct 34 GACGGTGGAAATGAAAACGACGAAGATGTCGGCATGTTAAGGGATGGA---GTAAGAGAG 90
Query 114 TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATAGTTTAACCATTAGTATAGTT 173
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 91 TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATGGTTTAGCCATTAGTAGAGTT 150
Query 174 TATTGGAACGCTCATGTTTTTAGGTCATGTTTAG 207
| | ||||| |||||||||||||||||||||||
Sbjct 151 TGT-GGAACATTCATGTTTTTAGGTCATGTTTAG 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11511314521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5