BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930296 Length=253 Score E Sequences producing significant alignments: (Bits) Value AT1G66790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 139 1e-32 > AT1G66790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50674.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24918012-24918356 REVERSE LENGTH=183 Length=183 Score = 139 bits (75), Expect = 1e-32 Identities = 129/154 (84%), Gaps = 7/154 (5%) Strand=Plus/Plus Query 57 GACGGTGGGGACGGAGACGATGAAGATG-CTG-ATGTTAAGTG-TGGATTTGTTCCACAG 113 |||||||| | | | |||| ||||||| | | |||||||| | |||| || | || Sbjct 34 GACGGTGGAAATGAAAACGACGAAGATGTCGGCATGTTAAGGGATGGA---GTAAGAGAG 90 Query 114 TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATAGTTTAACCATTAGTATAGTT 173 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| Sbjct 91 TTTGGTAATAGTTTTACCATTACGGGGGAGTTTGGTTATGGTTTAGCCATTAGTAGAGTT 150 Query 174 TATTGGAACGCTCATGTTTTTAGGTCATGTTTAG 207 | | ||||| ||||||||||||||||||||||| Sbjct 151 TGT-GGAACATTCATGTTTTTAGGTCATGTTTAG 183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11511314521 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5