BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930298
Length=3088
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22980.1 | Symbols: | Ribosomal protein S5/Elongation facto... 4752 0.0
> AT3G22980.1 | Symbols: | Ribosomal protein S5/Elongation factor
G/III/V family protein | chr3:8160156-8163316 REVERSE LENGTH=3161
Length=3161
Score = 4752 bits (2573), Expect = 0.0
Identities = 2904/3066 (95%), Gaps = 14/3066 (0%)
Strand=Plus/Plus
Query 21 ATGGATGATTCTGAAGGTAGGAAAGTTAGGAACATATGTATTCTGGCACATGTAGATCAC 80
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 1 ATGGATGAATCTGAAGGTAGGAAAGTTAGGAACATATGTATACTAGCACATGTAGACCAC 60
Query 81 GGTAAGACGACTCTCGCTGATCATCTAATTGCTTCTTCCGGTGGCGGTGTACTTCATCCG 140
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 61 GGTAAGACGACTCTCGCCGATCACCTAATTGCTTCTTCCGGTGGCGGTGTTCTTCACCCG 120
Query 141 AGGCTTGCCGGGAAGCTTAGGTACATGGACTATCTTGATGAAGAACAGAGGCGTGCAATA 200
|| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 121 AGACTTGCCGGGAAGCTTAGGTTCATGGACTATCTAGATGAAGAACAGAGACGTGCAATC 180
Query 201 ACGATGAAGAGCTCTTCGATTTCT-TTACGGTATAAGGACTATTCTTTAAACCTGATTGA 259
|||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||
Sbjct 181 ACGATGAAGAGCTCTTCGATTTCTCTTA-AATATAAAGACTATTCTTTGAACCTGATTGA 239
Query 260 TTCCCCTGGGCATATGGATTTCTGTAGTGAAGTTTCGACAGCTGCTCGGTTAAGTGATGG 319
||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 240 TTCTCCTGGTCATATGGATTTCTGTAGTGAAGTCTCAACAGCTGCTCGGTTAAGTGACGG 299
Query 320 GGCGTTGGTTTTGGTTGATGCTGTTGAAGGTGTACATATTCAGACGCATGCTGTGTTGCG 379
|||||||||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 300 TGCGTTGGTTTTGGTTGATGCTGTTGAGGGAGTTCATATTCAAACGCATGCTGTGTTGCG 359
Query 380 TCAAGCTTGGATTGAGAAGTTGACTCCTTGTTTGGTGCTTAATAAGATTGATCGGTTGAT 439
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 TCAAGCTTGGATAGAGAAGTTGACTCCTTGTTTGGTGCTTAATAAGATTGATAGGTTGAT 419
Query 440 TTGTGAGTTGAGGTTGAGCCCTATGGAAGCGTATACCCGTTTGATTAGGATTGTTCATGA 499
|| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 TTTTGAGTTGAGGTTGAGTCCTATGGAGGCGTATACTCGTTTGATTAGGATTGTTCATGA 479
Query 500 GGTTAATGGGATTGTGAGCGCGTATAAGTCGGAGAAGTATTTGTCGGATGTTGACTCTAT 559
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 480 GGTTAACGGGATTGTGAGTGCGTATAAGTCAGAGAAGTATTTGTCGGATGTTGATTCTAT 539
Query 560 ACTTGCTAGTCCTTC-GGGTGAGTTGTCTGCTGAGAGTCTTGAGTTGTTGGAGGATGATG 618
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACTTGCTAGTCCTTCAGGG-GAGTTGTCTGCTGAGAGTCTTGAGTTGTTGGAGGATGATG 598
Query 619 AAGAAGTTACTTTTCAGCCTCAGAAGGGTAATGTGGTCTTCGTGTGTGCTTTGGACGGGT 678
||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct 599 AAGAAGTTACTTTTCAGCCTCAGAAAGGTAATGTAGTATTCGTGTGTGCTTTAGACGGGT 658
Query 679 GGGGTTTCGGGATTGCAGAGTTTGCTAATTTCTATGCTTCCAAGCTTGGAGCTAGTGCGA 738
||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 659 GGGGTTTTGGGATTGCGGAGTTTGCTAATTTTTATGCCTCCAAGCTTGGAGCTAGTGCGA 718
Query 739 CTGCGTTGCAGAAATCATTATGGGGTCCTCGTTATTATATTCCTAAAACTAAGATGATTG 798
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 719 CTGCGTTGCAGAAATCGTTATGGGGTCCTCGTTATTATATTCCTAAGACTAAGATGATAG 778
Query 799 TAGGCAAGAAGTCTTTAAGTGCAGGAAGCAAGGCAAAACCAATGTTTGTGCAGTTTGTGC 858
|||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 779 TAGGGAAGAAGAATTTAAGTGCTGGAAGCAAGGCGAAACCAATGTTTGTGCAGTTTGTGC 838
Query 859 TTGAGCCTTTGTGGCAGGTTTACGAGGCAGCACTAGATCCCGGTGGGGATAGAA-CCGTT 917
|||||||||||||||||||||| || || ||||||||||| |||||||||| || |||||
Sbjct 839 TTGAGCCTTTGTGGCAGGTTTATGAAGCTGCACTAGATCCTGGTGGGGATA-AAGCCGTT 897
Query 918 CTTGAGAAAGTTATCAAATCTTTCAATTTGTCTATTCCACCACGTGAACTTCAGAACAAG 977
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 CTTGAGAAAGTTATCAAATCTTTCAATTTGTCTATTCCACCACGCGAACTTCAGAACAAG 957
Query 978 GATCCAAAAAACGTGCTTCAATCAGTGATGAGCCGTTGGCTTCCTTTGTCGGATGCAGTC 1037
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 958 GATCCAAAAAACGTGCTTCAATCGGTGATGAGCCGTTGGCTTCCTCTGTCTGATGCAGTC 1017
Query 1038 TTGTCTATGGCTGTGAAACATCTGCCAGATCCCATTGCAGCACAGGCATATAGAATCCCG 1097
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1018 TTGTCTATGGCTGTGAAACATCTGCCAGACCCCATTGCAGCACAGGCATATAGAATCCCA 1077
Query 1098 CGCTTGGTTCCAGAGAGGAAAATTATCGGTGGTGATGATGTTGATTCAAGTGTCCTTGCA 1157
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1078 CGCTTGGTTCCAGAAAGGAAAATTATTGGTGGTGATGATGTTGATTCAAGTGTCCTGGCA 1137
Query 1158 GAAGCAGAGCTTGTTAGAAAATCAATTGAGGCTTGTGATTCTAGCCGTGACAGCCCTTGT 1217
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 1138 GAAGCAGAGCTTGTTAGAAAATCAATCGAGGCTTGTGATTCTAGCAGTGACAGTCCTTGT 1197
Query 1218 GTTGTGTTTGTGTCGAAAATGTTTGCTATTCCCCTGAAAATGATTCCTCAAGATGGAAAT 1277
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 GTTGTGTTTGTGTCGAAAATGTTTGCTATTCCAATGAAAATGATTCCTCAAGATGGAAAT 1257
Query 1278 CACAGGGAGAGGATGAACGGTTTAAATGACGAGGACAGTAAAAGCGAGTCGGATGAGTGC 1337
||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1258 CACAGAGAGAGGATGAACGGTTTAAATGATGATGACAGTAAAAGCGAGTCAGATGAGTGC 1317
Query 1338 TTCCTTGCATTTGCTAGGATCTTTAGTGGAGTTCTTCGCGCCGGGCAAAGAGTCTTTGTA 1397
|||||||||||||||||||||||||| || || ||||| || ||||||||||||||||||
Sbjct 1318 TTCCTTGCATTTGCTAGGATCTTTAGCGGGGTACTTCGGGCTGGGCAAAGAGTCTTTGTA 1377
Query 1398 ATTACCGCTCTATATGATCCCCTCAAGGGTGAATCGTCTCAGAAGTACATTCAGGAGGCA 1457
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1378 ATTACCGCCCTATATGATCCCCTCAAGGGGGAATCGTCTCACAAGTACATTCAGGAAGCA 1437
Query 1458 GAACTGCATTCCCTATATCTTATGATGGGGCAAGGTTTAACACCAGTAACTGAGGTGAAA 1517
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1438 GAACTGCATTCCCTATATCTTATGATGGGGCAAGGTTTAACACCAGTAACAGAGGTGAAA 1497
Query 1518 GCCGGAAATGTAGTGGCCATAAGAGGGCTTGGACCATATATATCAAAAAGCGCAACACTT 1577
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCCGGAAATGTAGTGGCCATAAGAGGGCTTGGACCATATATATCAAAAAGCGCAACACTC 1557
Query 1578 TCATCTACTAGAAACTGCTGGCCTTTAGCCAGCATGGAGTTTCAGGTCTCTCCCACTCTT 1637
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1558 TCATCTACTAGAAACTGTTGGCCCTTAGCCAGCATGGAGTTTCAGGTGTCTCCCACTCTT 1617
Query 1638 AGAGTTGCGATTGAACCATCGGATCCTGCAGATATGAGTGCTTTGATGAAAGGTCTAAGA 1697
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1618 AGAGTTGCGATTGAACCATCGGATCCTGCAGATATGAGTGCTCTGATGAAAGGTCTAAGA 1677
Query 1698 CTTCTAAACCGAGCAGATCCATTTGTGGAGATTACAGTGTCTGCTAGAGGAGAACATGTG 1757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CTTCTAAACCGAGCAGATCCATTTGTGGAGATTACAGTGTCTGCTAGAGGAGAACATGTA 1737
Query 1758 CTTGCTGCTGCTGGAGAGGTTCATCTTGAAAGATGCATTAAGGATTTAAAAGAGAGATTT 1817
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1738 CTTGCTGCTGCTGGAGAGGTTCATCTTGAAAGATGCGTTAAGGATTTAAAAGAGAGATTT 1797
Query 1818 GCAAAAGTGAACCTAGAAGTCTCTCCGCCTCTCGTGTCCTACAGGGAGACCATTGAAGGT 1877
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1798 GCAAAAGTGAACCTAGAAGTCTCTCCACCTCTCGTGTCCTACAGGGAGACCATTGAAGGT 1857
Query 1878 GATGGATCTAATCTTTTGGAAAGTTTGAGATCTCTAAGCTTGAATACTTCGGATTACATC 1937
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1858 GATGGATCTAATCTTTTGGAAAGTTTGAGATCTCTAAGCTTGAATTCTTCGGATTACATC 1917
Query 1938 GAGAAGAGAACTCCAAATGGCAGATGCATTATCAGAGTACATGTCATGAAACTACCGCAC 1997
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1918 GAGAAGAGAACTCCAAATGGCAGATGCATTATCAGAGTACATGTCATGAAACTACCACAC 1977
Query 1998 TCTCTAACCAAGCTGCTTGATGAGAACACTGAATTGCTTGGTGACATAATTGGAGGTAAA 2057
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1978 GCTCTAACCAAGCTGCTTGATGAGAACACTGAATTACTTGGTGACATAATTGGAGGTAAA 2037
Query 2058 GGCAGTCATAGCGTTAAGATACTAGAATCCCAAAACCCAAGCCTCGGAGAAAATGTGGAT 2117
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 2038 GGCAGTCATAGCGTTAAGATTCTAGAATCCCAAAAGCCAAGCCTCGGGGAGAATGTGGAT 2097
Query 2118 CCCATCGAAGAATTGAAGAAACAGTTGA-TTGAAGCTGGTGTTTCATCAAGTTCTGAAAC 2176
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 2098 CCCATCGAAGAATTGAAGAAACAGTT-AGTTGAAGCTGGCGTTTCATCAAGTTCTGAAAC 2156
Query 2177 CGAAAAGGATCGCGAAAAATGTAAAACCGAATGGTCGAAACTGCTCAAGAGGATTTGGGC 2236
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2157 CGAAAAGGATCGCGAAAAATGTAAAACCGAATGGTCGAAACTGCTCAAGAGAATTTGGGC 2216
Query 2237 GCTTGGTCCAAGAGAAAAAGGTCCAAACATACTATTCGCTCCAGATGGTAAAAGAATCAG 2296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2217 GCTTGGTCCAAGAGAAAAAGGTCCAAACATACTATTCGCTCCAGATGGTAAAAGAATC-G 2275
Query 2297 -AGAGGATGGATCAATGCTCGTAAGAGGCTCTCCTCATGTCTCTCAGAGACTTGGCTTCA 2355
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 CCGAGGATGGATCAATGCTTGTAAGAGGCTCTCCTCATGTCTCTCAGAGACTTGGCTTCA 2335
Query 2356 CAGAAGATTCTACTGAGACACCTTCAGATA-TATCTGAAACAGCATTGTACACCGAAGCA 2414
||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||
Sbjct 2336 CAGAAGATTCTACTGAGACACCTGCAGA-AGTATCTGAAACAGCATTGTACAGTGAAGCA 2394
Query 2415 CTGACTCTCGAGAGCAGCATCGTCTCGGGCTTTCAGCTAGCGACAGCATCAGGACCTCTA 2474
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2395 CTGACCCTCGAGAGCAGCATCGTCTCGGGTTTTCAGCTAGCGACAGCATCAGGACCTCTT 2454
Query 2475 TGCGATGAACCAATGTGGGGATTAGCTTTCACCATTGAGTCTCATCTCGCTCCCGCAGAA 2534
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2455 TGTGATGAACCAATGTGGGGATTAGCTTTCACCATTGAATCTCATCTCGCTCCCGCAGAA 2514
Query 2535 GATTTTGAAACAGATAAACCCGAAAACTTTGGCATTTTCACAGGACAAGTCATGACAGCT 2594
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 GATGTTGAAACAGATAAACCCGAAAACTTTGGCATTTTCACAGGACAAGTCATGACAGCT 2574
Query 2595 GTCAAAGACGCATGTAGAGCCGCCGTGCTTCAGACAAATCCACGTATTGTCGAAGCAATG 2654
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2575 GTCAAAGACGCATGTAGAGCCGCCGTGCTCCAGACAAATCCACGTATCGTCGAAGCAATG 2634
Query 2655 TACTTCTGTGAACTGAACACGGCACCTGAGTATCTTGGTCCGATGTACGCGGTTCTAAGC 2714
|||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 2635 TACTTCTGCGAACTGAACACTGCACCTGAGTATCTTGGTCCAATGTACGCTGTTCTAAGC 2694
Query 2715 AGAAGACGAGCTAGAGTGCTCAAGGAAGAAATGCAAGAAGGGTCATCCCTGTTCACTA-T 2773
||||||||||||||| | |||||||||||||||||||||||||| || | ||||| | |
Sbjct 2695 AGAAGACGAGCTAGAATACTCAAGGAAGAAATGCAAGAAGGGTCGTCTTTATTCAC-AGT 2753
Query 2774 CCACACGTACGTGCCTGTTTCGGAAAGCTTCGGTTTTGCTGACGAGCTAAGAAAAGGAAC 2833
|||| |||| || || ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct 2754 CCACGCGTATGTTCCAGTTTCAGAAAGCTTCGGGTTTGCAGACGAGCTGAGAAAAGGAAC 2813
Query 2834 GTCTGGTGGTGCAAGTGCTCTGATGGTTCTGAGCCATTGGGAAATGCTCGAGGAAGATCC 2893
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2814 GTCTGGTGGCGCGAGTGCTCTGATGGTTCTGAGCCATTGGGAAATGCTCGAGGAAGACCC 2873
Query 2894 CTTCTTTGTTCCCAAAACCGAAGAAGAAATCGAGGAGTTTGGTGATGGAGCAAGCGTTCT 2953
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 2874 CTTCTTTGTTCCCAAAACCGAAGAAGAGATCGAGGAGTTTGGTGACGGAGCAAGCGTGCT 2933
Query 2954 TCCGAACACAGCGAGGAAGCTCATCAACGCCGTACGTCGCAGGAAAGGATTACACGTTGA 3013
||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 2934 TCCAAACACCGCGAGGAAACTCATCAACGCCGTACGACGTAGGAAAGGATTACACGTTGA 2993
Query 3014 GGAGAAAGTGGTTCAACACGCCACTAAACAAAGAACCTTGGCTCGTAAAGTTTGAGtttt 3073
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2994 GGAGAAAGTGGTTCAATACGCCACTAAACAAAGAACCTTGGCTCGTAAAGTTTGAGTTTA 3053
Query 3074 tttttt 3079
| ||||
Sbjct 3054 TATTTT 3059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153561012523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5