BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930303

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   603    6e-172


> AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:8177215-8179743 REVERSE LENGTH=2529
Length=2529

 Score =  603 bits (326),  Expect = 6e-172
 Identities = 377/401 (94%), Gaps = 6/401 (1%)
 Strand=Plus/Plus

Query  9     CTGTAAAGTGAAAGATCCATGGTGAGAAAAGCAGAAGCTATATTCGAAAGCATGAAACAG  68
             ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  2074  CTGTATAGCGAAAGATCGATGGTGAGAAAAGCAGAAGCTATATTCGATAGCATGAAACAG  2133

Query  69    AGAAGAGAAGCGAACGAGTTTACCTTTGCGATGATGTTATTGTTATGTATGTACAAGAAG  128
             ||| ||||||| |||||||||||||||||   ||||  | ||||||||||||||||||||
Sbjct  2134  AGAGGAGAAGCAAACGAGTTTACCTTTGC---GATG--A-TGTTATGTATGTACAAGAAG  2187

Query  129   AACGGTAGGTTTGAAGAAGCGACTCAGATAGCAAAACAGATGAGAGAGATGAAGATTCTC  188
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  2188  AACGGTCGGTTTGAAGAAGCGACTCAGATAGCAAAACAGATGAGAGAGATGAAGATTCTA  2247

Query  189   ACTGATCCGTTGAGTTACAACAGCGTTCTCGGTTTATTCGCTTTAGACGGAAGATTCAAA  248
             |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  2248  ACTGATCCGTTGAGCTACAACAGCGTTCTCGGCTTATTCGCTTTAGACGGGAGATTCAAA  2307

Query  249   GAAGCTGTTGAGACTTTCAAAGAGATGGTTTCATCCGGAATTCAACCTGATGACTCAACG  308
             |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  2308  GAAGCTGTTGAGACATTCAAAGAGATGGTGTCATCTGGAATTCAACCTGATGACTCAACG  2367

Query  309   TTCAAATCACTTGGAACCATTCTGATGAAACTCGGGATGTCGAAAAAAGCTGTTCGTAAG  368
             ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  2368  TTCAAATCACTAGGAACCATTCTGATGAAACTTGGGATGTCGAAAAAAGCTGTTCGTAAG  2427

Query  369   ATCGAAGAAATTAGGAAAAAAGAGATGAAGCAAGGATTAGA  409
             |||||||||||||||||||||||||| |||| |||||||||
Sbjct  2428  ATCGAAGAAATTAGGAAAAAAGAGATCAAGCGAGGATTAGA  2468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5