BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930309
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 ... 922 0.0
AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid induci... 425 2e-118
> AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible
2 | chr3:8180768-8181800 REVERSE LENGTH=941
Length=941
Score = 922 bits (499), Expect = 0.0
Identities = 542/563 (96%), Gaps = 2/563 (0%)
Strand=Plus/Plus
Query 1 TTGATATTGATCAAAAAGCAATGGCGTACGAGAAAGTCAACGAGCTTAACCTTAAGGACA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 TTGATATTGATCCAAAAGCAATGGCGTACGAGAAAGTCAACGAGCTTAACCTTAAGGACA 155
Query 61 CAGAGCTATGTCTTGGATTACCAGGAAGAACACAGGAA-ATCAAAGAAGAACAAGAGGTT 119
|||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||
Sbjct 156 CAGAGCTATGTCTTGGATTACCCGGAAGAACAGA-GAAGATCAAAGAAGAACAAGAGGTT 214
Query 120 TCTTGCGTTAAAAGCAACAACAAGCGTCAATTTGAAGAAACTCGTGAGGAAGAAGAATCT 179
|||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 215 TCTTGCGTTAAAAGTAACAACAAGCGTCTATTTGAGGAAACTCGTGATGAAGAAGAATCT 274
Query 180 ACACCTCCTACCAAAACTCAAATCGTTGGATGGCCACCGGTGAGATCTTCCCGTAAGAAC 239
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 275 ACACCTCCTACCAAAACTCAAATCGTTGGTTGGCCACCAGTGAGATCTTCCCGTAAGAAC 334
Query 240 AACAACAGTGTGAGCTACGTGAAAGTGAGTATGGACGGAGCTCCTTACCTCCGCAAGATC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 335 AACAACAGTGTGAGCTACGTGAAAGTGAGTATGGACGGAGCTCCTTACCTTCGCAAGATC 394
Query 300 GATCTCAAGACATACAAAAACTACCCCGAGCTTCTCAAGGCGTTAGAGAACATGTTCAAA 359
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 395 GATCTCAAGACATACAAAAACTACCCCGAGCTTCTCAAAGCGTTAGAGAATATGTTCAAA 454
Query 360 GTCACGATTGGTGAATATTGTGAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACA 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GTCATGATTGGTGAATATTGTGAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACA 514
Query 420 TACGAAGATAAAGATGGAGATTGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCT 479
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 515 TACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCT 574
Query 480 TCTTCTTGTAAGAGACTCAGAATCATGAAAGGATCCGATGCTCCTGCTTTAGACTCTTCC 539
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 575 TCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACGCTCCTGCTCTAGACTCTTCC 634
Query 540 TTATGATCCAGAGAAGATGAGAA 562
|||||||||||||||| ||||||
Sbjct 635 TTATGATCCAGAGAAGCTGAGAA 657
> AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid inducible
| chr4:8361058-8361986 FORWARD LENGTH=837
Length=837
Score = 425 bits (230), Expect = 2e-118
Identities = 414/497 (83%), Gaps = 35/497 (7%)
Strand=Plus/Plus
Query 44 GCTTAACCTTAAGGACACAGAGCTAT-GTCTT-GGATTACCAGGAAGAACACAGGAAATC 101
|||||||||||||||||||||||| | || || |||||||| || || |||| | ||
Sbjct 142 GCTTAACCTTAAGGACACAGAGCT-TCGT-TTGGGATTACCCGG-AG--CACAAG-AA-- 193
Query 102 AAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGCAACAACAAGCGTCAATTTGAAGAAAC- 160
|| || ||| ||| |||||||||| | ||||||||||||||| ||| ||| |||
Sbjct 194 GAACAACAACTAGAACTTTCTTGCGTCAGAAGCAACAACAAGCG-CAA---GAA-CAACG 248
Query 161 TCGTGAGGA-AGAAGAATCTACACCTCCTAC--C-AAAACTCAAATCGTTGGATGGCCAC 216
| | | | |||||||||| | |||||| | | ||||| ||||||||||||||||| |
Sbjct 249 AC-TCA--ACAGAAGAATCTGCTCCTCCTCCTGCAAAAACACAAATCGTTGGATGGCCTC 305
Query 217 CGGTGAGATCTTCCCGTAAG---AACAACAAC---AGTGTGAGCTACGTGAAAGTGAGTA 270
| ||||||||| ||||||| ||||||||| | ||||| || |||||||||||||
Sbjct 306 CAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTGAGTTATGTGAAAGTGAGTA 365
Query 271 TGGACGGAGCTCCTTACCTCCGCAAGATCGATCTCAAGACATACAAAAACTACCCCGAGC 330
||||||||||||| || ||||| ||||| |||||||||| ||||||||||| || ||||
Sbjct 366 TGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGATGTACAAAAACTATCCAGAGC 425
Query 331 TTCTCAAGGCGTTAGAGAACATGTTCAAAG-TCACGA-TTGGTGAATATTGTGAGAGAGA 388
||||||| || |||||||||||||| ||| |||| | | |||||||||| ||||||||
Sbjct 426 TTCTCAAAGCACTAGAGAACATGTTC-AAGTTCAC-AGTAGGTGAATATTCCGAGAGAGA 483
Query 389 AGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGAGATTGGATGTT 448
||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 484 AGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTT 543
Query 449 GGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGT-AAGAGACTCAGAATCATGA 507
||| ||||||||||||||||||||||||||||| |||||| || | ||||||||||||||
Sbjct 544 GGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGA 602
Query 508 AAGGATCCGATGCTCCT 524
|||||||||| ||||||
Sbjct 603 AAGGATCCGAAGCTCCT 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5