BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930323

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23200.1 | Symbols:  | Plant invertase/pectin methylesterase...   233    4e-61


> AT1G23200.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily | chr1:8227178-8229582 FORWARD LENGTH=1905
Length=1905

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 165/184 (90%), Gaps = 2/184 (1%)
 Strand=Plus/Plus

Query  1     CTTCCTCGGAGAAAAAAGAGACTTATGATATACGTGAAGGCCAGCTTTTACCGAGAAAAC  60
             ||||||||||||||  |||||||| |||||||||| || ||| || ||||| ||||||||
Sbjct  878   CTTCCTCGGAGAAACCAGAGACTTGTGATATACGTTAAAGCCGGCGTTTACAGAGAAAAC  937

Query  61    GTGGTGAGCAAAAAATCGATCAAGAACGTGATGGTTATCGGAGACGGTATCAATTCTACC  120
             ||||| | ||| |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct  938   GTGGTAATCAAGAAATCGATCAAGAACGTGATGGTTATCGGAGATGGCATCGATTCTACC  997

Query  121   ATCGTCACCGGTAATAGAAACGTTGAAGATGGCACGACAACGTTTCAG-TCCGCAACTTT  179
             ||||||||||||||||| |||||| ||||||||||||| |||||| || |||||||||||
Sbjct  998   ATCGTCACCGGTAATAGGAACGTTCAAGATGGCACGACGACGTTT-AGGTCCGCAACTTT  1056

Query  180   TGCT  183
             ||||
Sbjct  1057  TGCT  1060



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10455691792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5