BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930344

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF04...   758    0.0  


> AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr3:8281363-8282778 FORWARD LENGTH=930
Length=930

 Score =  758 bits (410),  Expect = 0.0
 Identities = 475/506 (94%), Gaps = 5/506 (1%)
 Strand=Plus/Plus

Query  4    TTGGGTTTGTTGTGGAAGAGAAATGATAGATATCCCTGGAACACCAGGGACTTTGACTGG  63
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  275  TTGGGTTTCTTGTGGAAGAGAAATGATAGATATCCCTGGAACACCAGGGACTTTGACTGG  334

Query  64   TCTT-GTCTTGAGAATTTCTCAGTGTGTTTTTGCTGCTGGTTCGATTTCGTATATGGTTA  122
            | || ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  335  T-TTAGTCTTGAGAATCTCTCAGTGTGTTTTTGCTGCTGGTTCCATTTCTTATATGGTTA  393

Query  123  CTTCTGGTGGATTCTTCAGCTTCACTGCTTTCTGCTATCTAATTGCAGCAATGGGTTTGC  182
            |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  394  CTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATGGGATTGC  453

Query  183  AAGTCATATGGAGTTTCGGTCTTGCGATACTAGACACATTCGCCTTAGTGAGAAAGAAAA  242
            |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  454  AAGTCATATGGAGTTTTGGTCTTGCAATACTAGACACATTCGCATTAGTGAGAAAGAAAA  513

Query  243  CGCTTCTTAGTCCGGTTTTAGTCAGCCTATTTGTAGTTGGAGATTGGGTAACATCGACAT  302
            ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  514  CGCTTCTTAGTCCAGTTTTAGTCAGCCTCTTTGTAGTTGGAGATTGGGTAACATCGACAT  573

Query  303  TGTCACTAGCAGGAGCTTCATCATCCGCGGGAATAACGGTTTTATACTTTGGCGATTTAG  362
            |||||||||| ||||| || || ||||||||||||||||||||||||||||| |||||||
Sbjct  574  TGTCACTAGCGGGAGCATCGTCTTCCGCGGGAATAACGGTTTTATACTTTGGAGATTTAG  633

Query  363  GAAGCTGCAGTTTCGAAGCAGAGTGTTGGAAATACCAACTCTCTGTAGCTTTAGCTTTCC  422
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  634  GAAGCTGCAGTTTCGAAGCAGAGTGTTGGAAGTACCAACTCTCTGTAGCTTTAGCCTTCC  693

Query  423  TTTGTTGGATCACCATCGCCATTTCCTCACTTACCACACTCTGGTTACTTGCTTCCGCGT  482
            ||||||||||||| |||||| |||| |||||||| ||||| |||||||||||||| ||||
Sbjct  694  TTTGTTGGATCACTATCGCCGTTTCTTCACTTACTACACTTTGGTTACTTGCTTCAGCGT  753

Query  483  AAGTAAAA-CCGAAAAA-CTCT-CTG  505
            |||||||| |||||||| |||| |||
Sbjct  754  AAGTAAAAACCGAAAAAACTCTTCTG  779



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5