BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930345

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) D...   305    3e-82
  AT4G18460.1 | Symbols:  | D-Tyr-tRNA(Tyr) deacylase family prot...   263    2e-69
  AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) ...  86.1    4e-16


> AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) 
DNA-binding superfamily protein | chr3:8283090-8285081 REVERSE 
LENGTH=1294
Length=1294

 Score =  305 bits (165),  Expect = 3e-82
 Identities = 228/258 (88%), Gaps = 5/258 (2%)
 Strand=Plus/Plus

Query  415   AGGCGGAGAAAAACGAATTATGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGG  474
             ||||||| ||||||||  || | |||||||||||||||||||||||||| ||||||||| 
Sbjct  870   AGGCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGA  929

Query  475   TGGTGCAACAGTTGAAATCTATGGCGTTTCCATCACCGGGTTTCATCCCCTCGCAGCATC  534
             ||| ||||||||| |||||||||| | |||||||||| |||||||| ||||| |||||||
Sbjct  930   TGGAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATC  989

Query  535   CAGCAGCTTTCCA-TCCCAATAATATGTCGGTTTATT-CGGGTTACAGTTACTATCCTCC  592
             ||||||||||||| |||| |||| ||| ||||   || |   |||| | |||||||||||
Sbjct  990   CAGCAGCTTTCCATTCCC-ATAAGATGGCGGTGGCTTAC-CCTTACGGCTACTATCCTCC  1047

Query  593   AAACATGGCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGGTCTCGTGATCACA  652
             ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct  1048  AAACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACG-TCTCGTGATCTCA  1106

Query  653   AAAATCTTCCTCCTGTTG  670
             ||||||||||||||||||
Sbjct  1107  AAAATCTTCCTCCTGTTG  1124


> AT4G18460.1 | Symbols:  | D-Tyr-tRNA(Tyr) deacylase family protein 
| chr4:10195537-10196796 REVERSE LENGTH=805
Length=805

 Score =  263 bits (142),  Expect = 2e-69
 Identities = 160/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  249  GTTAGTCAGTTCACATTATACGGATTCTTGAAAGGTAACAAACCTGATTTTCATGTCGCA  308
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  349  GTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATTTTCATGTCGCA  408

Query  309  ATGCCGCCTGATAAAGCGAAACCGTTTTACGCCTCTTTAGTCGAGAAATTCCAGAAAGCA  368
            ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  409  ATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAATTCCAGAAAGCA  468

Query  369  TATAATCCCGATGCAGTAAAAGATGGTGTGTTTGGAGCTACGATGCAGG  417
            |||||||| ||||| || |||||||||||||||||||||| ||||||||
Sbjct  469  TATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGG  517


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 70/71 (99%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  2    ATGTCGAAAAGTTTTAAACATGAGATTGTTCTCTAATGAAACCACTGGCAAAGGATGGGA  61
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  252  ATGTCGAAAAGTTTTAAACATGAGATTATTCTCTAATGAAACCACTGGCAAAGGATGGGA  311

Query  62   CCAAAATGTAA  72
            |||||||||||
Sbjct  312  CCAAAATGTAA  322


 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  154  AATGCAGAGGAATTATGGAGTTTTACTTG  182
            |||||||||||||||||||||||||||||
Sbjct  321  AATGCAGAGGAATTATGGAGTTTTACTTG  349


> AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) 
DNA-binding superfamily protein | chr4:8299759-8301667 FORWARD 
LENGTH=1334
Length=1334

 Score = 86.1 bits (46),  Expect = 4e-16
 Identities = 80/96 (83%), Gaps = 4/96 (4%)
 Strand=Plus/Plus

Query  415   AGGCGGAGAAAAACGA-ATTATGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAG  473
             |||||||||| |||||  | | ||||||||||||||||||||||||||||||| ||||||
Sbjct  926   AGGCGGAGAAGAACGAGCTGA-GGGAGGAAAAGCTGGTGTTGAAGGCGGATAAAGAGAAG  984

Query  474   GTGGTGCAACAGTTGAAA-TCTATGGCGTTTCCATC  508
                |  |||||||| ||| |||||| ||  ||||||
Sbjct  985   ACAGAACAACAGTT-AAAGTCTATGACGGCTCCATC  1019



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32401024815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5