BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930349
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23240.1 | Symbols: ERF1, ATERF1 | ethylene response factor ... 1000 0.0
> AT3G23240.1 | Symbols: ERF1, ATERF1 | ethylene response factor
1 | chr3:8295644-8296604 FORWARD LENGTH=961
Length=961
Score = 1000 bits (541), Expect = 0.0
Identities = 636/682 (93%), Gaps = 6/682 (1%)
Strand=Plus/Plus
Query 14 TTTCTACATGGATCCATCTTTT-CTTCAGTCACCGTTATCTAGCTTCTCGCCGGAATAtt 72
||||||||||||||||| |||| ||||||| || || || ||||||| ||||||||||
Sbjct 55 TTTCTACATGGATCCAT-TTTTAATTCAGTCCCCATTCTCCGGCTTCTCACCGGAATATT 113
Query 73 ctaccggatcttctccggaatctttctcttcctcttcttctaataactactctcttccct 132
||| |||||||||||| || |||||||| |||||||||||||| || |||||||||||||
Sbjct 114 CTATCGGATCTTCTCCAGATTCTTTCTCATCCTCTTCTTCTAACAATTACTCTCTTCCCT 173
Query 133 tcAACGAGAACGACTCAGAGGAAATGTTTCTCTACGGTCTAATCGAGCAATCCACGCAAC 192
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 174 TCAACGAGAACGACTCAGAGGAAATGTTTCTCTACGGTCTAATCGAGCAGTCCACGCAAC 233
Query 193 GAAAC-T-TCATCGAATCGAATCTTCAAGACCTTCCGGTCAAATCCGTAAGCTCAAGAAA 250
|||| | | || || ||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 234 -AAACCTAT-ATTGACTCGGATAGTCAAGACCTTCCGATCAAATCCGTAAGCTCAAGAAA 291
Query 251 CTCAGAGAAGTCGTACAGAGGTGTAAGACGACGGCCATGGGGGAAATTCGCGGCGGAGAT 310
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 292 GTCAGAGAAGTCTTACAGAGGCGTAAGACGACGGCCATGGGGGAAATTCGCGGCGGAGAT 351
Query 311 AAGAGATTCGACTCGAAACGGTATTCGGGTTTGGCTCGGGACGTTCGAAAGCGCGGAAGA 370
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 352 AAGAGATTCGACTAGAAACGGTATTAGGGTTTGGCTCGGGACGTTCGAAAGCGCGGAAGA 411
Query 371 GGCGGCTCTCGCCTACGATCAAGCCGCTTTCTCGATGAGAGGTTCTTCGGCGATTCTCAA 430
||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 412 GGCGGCTTTAGCCTACGATCAAGCTGCTTTCTCGATGAGAGGGTCCTCGGCGATTCTCAA 471
Query 431 TTTTTCGCCGGAGAGAGTTCAAGAGTCGCTTTCGGAGATTAAGTATACCTACGAGGATGG 490
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 472 TTTTTCGGCGGAGAGAGTTCAAGAGTCGCTTTCGGAGATTAAATATACCTACGAGGATGG 531
Query 491 TTGTTCTCCGGTTGTGGCTTTGAAGAGGAAACACTCGATGAGACGAAGAATGACCAATAA 550
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 532 TTGTTCTCCGGTTGTGGCGTTGAAGAGGAAACACTCGATGAGACGGAGAATGACCAATAA 591
Query 551 GAAGACGAAAGACAGTGACTTTGTTCACCGCTCCGTGAAGTTAGATAATGTTGTTGTCTT 610
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 592 GAAGACGAAAGATAGTGACTTTGATCACCGCTCCGTGAAGTTAGATAATGTAGTTGTCTT 651
Query 611 TGAGGATTTGGGAGAACAGTACCTTGAAGAGCTTTTGGGTTCGTCTGAAAATAGTGGGAC 670
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 652 TGAGGATTTGGGAGAACAGTACCTTGAGGAGCTTTTGGGGTCTTCTGAAAATAGTGGGAC 711
Query 671 TTGGTGAAAGATTAGGATTTGT 692
||||||||||||||||||||||
Sbjct 712 TTGGTGAAAGATTAGGATTTGT 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5