BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930354
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis t... 2298 0.0
AT4G14365.1 | Symbols: XBAT34 | XB3 ortholog 4 in Arabidopsis t... 508 4e-143
> AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis
thaliana | chr3:8321350-8324428 FORWARD LENGTH=1946
Length=1946
Score = 2298 bits (1244), Expect = 0.0
Identities = 1366/1425 (96%), Gaps = 7/1425 (0%)
Strand=Plus/Plus
Query 1 TTTCTGATCTGTGAGGAGAAATGGGACAACAGCAATCAAAAGGGGAATTGCTGTATCAGC 60
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TTTCTGATCTGTGAGCAAAAATGGGACAACAGCAATCAAAAGGGGAATTGCTGTATCAGC 278
Query 61 AAGTGAGTTATGGTAACTCTGAAGGAATTCGAACTCTTCATCGAGATGGTGCAGACCTTG 120
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 279 AAGTTAGTTATGGTAACTCTGAAGGAATTCGAGCTCTTCATCGAGATGGTGGAGACCTTG 338
Query 121 AGTGGATGGATAGAGAAGGAAAAACTGCGTTGATCTTGGCTTGTATGAACTCGGAGCTAT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 339 AGTGGATGGATAGAGAAGGAAAAACTCCGTTGATCTTGGCTTGTATGAACTCCGAGCTAT 398
Query 181 ATGATGTTGCTAAAACTTTGATTGAGCTGGGTTCTAATGTTAATGCTTATCGTCCTGGTC 240
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 399 TTGATGTTGCTAAGACTTTGATTGAGTTGGGTTCTAATGTTAATGCTTATCGTCCTGGTC 458
Query 241 GTCATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTTGAGAACATTGTTAAGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 459 GTCATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTTGAGAACACTGTTAAGT 518
Query 301 TACTTCTTTCGCACGGTGCAAATCCACTTGTTCTCAATGATGATTGTCAGACACCACTTG 360
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 519 TACTTCTTTCTCACGGTGCGAATCCACTTGTTCTTAATGATGATTGTCAGACACCACTTG 578
Query 361 AGGTTGCTAGAGTCAAAGGGTTCAGCAATGTCGTACGTGCAATTGAGAAACACATCTGCT 420
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 579 AGGTCGCTAGAGTCAAAGGGTTTAGCAATGTTGTACGTGCAATTGAGAAACACATCTGCT 638
Query 421 TGTTCTCGGGTTGGATGCGGGAATTTTACGGCCCTACCTTTCTCGACTTATTTGCTCCGC 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TGTTCTCGGGTTGGATGCGTGAATTTTACGGCCCTACCTTTCTCGACTTATTTGCTCCGC 698
Query 481 AGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGTACCTACTGGTTCAAGAAACCCTACAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGTACCTACTGGTTCAAGAAACCCTACAA 758
Query 541 AGCCTTTCAAATTGGAGCTGGTTGTGTATGCTAGTCTGCAGGATGCGCAGCCACGCAC-G 599
|||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 759 AGCCTTTCAAGTTGGAGCTGGTTGTGTATGCTAGTCTGCAAGATGCACAGCCACGCACAG 818
Query 600 ATGATGCCTTTGTGGAAAGCAAACTTAGAAGAACCAAAAGCAAAGCAGTCCGATACTTCA 659
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 819 -TGATGCCTTTGTGGAAAGCAAACTTGGAAGAACCAAAAGCGAAGCAGTCCGATACTTCA 877
Query 660 GTGATGATCGTTGATAACTCCACAATCCCAAGCCGCAGGATGAAGAAACGAAGGGTCTGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GTGATGATCGTTGATAACTCCACAATCCCAAGCCGCAGGATGAAGAAACGAAGGGTCTGC 937
Query 720 GCCTCCCACGGGAGACGTAGGCCTCAAGTAGTTAGGCAAACACGACTTAAACTCGCACCT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 938 GCCTCCCACGGGAGACGTAGGCCTCAAGTAGTTAGGCAAACACGTCTTAAATTCGCACCT 997
Query 780 GCGACTGAAGGTGACAGCCAACAGCTGAAGTGGTTTTGTGATGCATGTAAAGGAATTCCA 839
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 998 TCGACTGAAGGTGACAGCCAACAGCTAAAGTGGTTTTGTGATGCATGTAAAGGGATTCCA 1057
Query 840 CAGCCGATGCATCCACCGGTCTTCCTCCAAACAGCACCATCTGCTCCACCACCACCATCA 899
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1058 CAGCCGATGCATCCACCGGTCTTCCTCCAAGCACCACCATCTGCTCCACCACCACCATCA 1117
Query 900 GAAGATGAACTAGCCATGGCAATGAACGCCTCGCTTCACACTACTATGAGTGACCCATCA 959
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1118 GAAGATGGACTAGCCATGGGAATGAACGCCTCACTTCACACTACTATGAGTGACCCATCA 1177
Query 960 AATCTCAATCACCATTCCATCGGTCAAGCAAGTTCCTCATCCGGTCCAAGCTCATCAACC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AATCTCAATCACCATTCCATCGGTCAAGCAAGTTCCTCATCCGGTCCAAGCTCATCAACT 1237
Query 1020 GCCCCTCCCTCAGGAAAAGCAAGCGCCTTTGCG-TTCAATAGCCATGGAATTGGCATTGT 1078
|| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1238 GCACCTCCCTCAGGAAAAGCAAGTGCCTTTG-GATTCAATAGCCATGGAATTGGCATTGT 1296
Query 1079 CCTAGAATCTTCACCATCAGCTCCTCCATTGACAGATAATGATATAGC-AGCCGTAGACG 1137
|||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||
Sbjct 1297 GCTAGAATCTTCACCATCAGCTCCTCCATTGACAGATGATGATATAGCTA-CAGTAGACG 1355
Query 1138 AAGGTCCAATTCATTACCCATCGATCGATTCAACACCTGTCGATCTCCCATCTGCTTCTT 1197
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 1356 ATGGTCCAATTCATTACCCATCAATCGATTCAACACCAGTCGATCTCCCATCTGCTGCTT 1415
Query 1198 CTCTTCCAGCTCCAACCGAAGGTGAAAGGAAAGAAGACGGGAGCACTGGAACATGTGCGA 1257
||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1416 CTCTTCCAGCTTCAACAGAAGGTGAAAGGAAAGAAGACGGGAACACTGGAACGTGTGCGA 1475
Query 1258 TATGTCTAGATGCTCCATCTGAAGCAGTCTGTGTCCCGTGTGGACATGTCGCGGGATGTA 1317
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TATGTCTCGATGCTCCATCTGAAGCAGTCTGTGTCCCGTGTGGACATGTCGCGGGATGTA 1535
Query 1318 TGTCTTGCTTGAAGGAGATCAAATCCAAGAATTGGGGATGTCCTGTCTGTCGCGCCAAGA 1377
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1536 TGTCTTGCTTGAAGGAGATCAAATCCAAGAATTGGGGATGTCCCGTCTGTCGAGCCAAGA 1595
Query 1378 TCGATCAGGTTGTTAAGCTGTACCGGGTCTGAAAACAGGTA-CAA 1421
||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 1596 TCGATCAGGTTATTAAGCTGTACCGTGTCTGAAAACAGGTATCAA 1640
> AT4G14365.1 | Symbols: XBAT34 | XB3 ortholog 4 in Arabidopsis
thaliana | chr4:8271464-8273765 REVERSE LENGTH=1407
Length=1407
Score = 508 bits (275), Expect = 4e-143
Identities = 654/831 (79%), Gaps = 49/831 (6%)
Strand=Plus/Plus
Query 49 TGCTGTATC-AGCAAGTGAGTTATGGTAAC-TCTGAAGGAATTCGAA-CTCTTCATCGA- 104
|||||| || || |||||||| | ||| || ||||| | || || | ||||| | |
Sbjct 115 TGCTGTTTCAAG-AAGTGAGTAACAACAACGTC-GAAGGTA-TCAAATCACTTCA-CCAT 170
Query 105 GATGGTGCA-GACCTTGAGTGGATGGATAGAGAAGGAAAAACTGCGTTGATCTTGGCTTG 163
|| || ||| || || ||| || |||||| | ||| | ||| | || ||||| |||||
Sbjct 171 GAAGGAGCAGGA-CTCGAGGGGGTGGATAAATTAGGGAGAACACCATTAATCTTAGCTTG 229
Query 164 TATGAAC-TCGGAGCTATATGATGTTGCTAAAACTTTGATTGAGCTGGGTTCTAATGTTA 222
|| |||| | || ||||||||||| || |||||| || ||||| |||| || ||||| |
Sbjct 230 TACGAACGAC-GATCTATATGATGTAGCAAAAACTCTGCTTGAGTTGGGCTCCAATGTCA 288
Query 223 ATGCTTATCGTCCTGGTCGTC-ATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGT 281
||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct 289 ATGCTTATCGTTCTGGTTG-CAATGGTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGT 347
Query 282 CTTG-AGAACATTGTTAAGTTACTTCTTTCGCACGGTGCAAATCCACTTG-TTCTCAATG 339
|| | | | || |||||||||||||| || ||||||||||||||| ||| |||| |||
Sbjct 348 CTCGTACA-CACGGTTAAGTTACTTCTGTCTCACGGTGCAAATCCA-TTGGTTCTTGATG 405
Query 340 ATGATTGTCA-GACACCACTTGAGGTTGCTAGAG-TCAAAGGGTT-CAGCAATGTCGTAC 396
||||| || | |||| | || ||||||||||||| | || || || ||| ||||||||||
Sbjct 406 ATGAT-GTTAAGACAGCTCTCGAGGTTGCTAGAGATGAA-GG-TTACAGTAATGTCGTAC 462
Query 397 GTGCAATTGAGAAACACATCTGCTTGTTCTCGGGTTGGATGCGGGAATTTTAC-GGC-CC 454
| ||||| |||| || |||||||||||||| ||||| ||||| || | || | ||| ||
Sbjct 463 GCGCAATCGAGAGTCATATCTGCTTGTTCTCTGGTTGTATGCGTGAGTATT-CTGGCTCC 521
Query 455 TACCTTTCTCGACTTATTTGCTCCGCAGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGT 514
| ||| || | ||||||||||| |||||||||||||||| |||||||||||| | ||
Sbjct 522 -AGCTTGCTTAATTTATTTGCTCCTCAGCTTCTTTCAAGAAAAGTATGGGTAGTTGTCGT 580
Query 515 ACCTACTGGTTCAAGAAACCCTACAAAGCCTTTCAAA-TTGGAGCTGGTTGTGTATGCTA 573
||| ||||||||||||||||||||||||||||| ||| |||||| ||||| |||||| ||
Sbjct 581 ACCAACTGGTTCAAGAAACCCTACAAAGCCTTT-AAAGTTGGAGTTGGTTCTGTATGATA 639
Query 574 GTCTGCAGGATGCGCAGCCACGCACGATGATGCCTTTGTGGAAAGCAAACTTAGAAGAAC 633
|| | |||||||| || ||| | | | |||| ||||||||||||||||||||||| ||||
Sbjct 640 GTATTCAGGATGCACAACCAAGAATGGTGATACCTTTGTGGAAAGCAAACTTAGAGGAAC 699
Query 634 CAAAAGCAAAGCAGTCCGAT-ACTTCAGTGATGATCGTTGATAACTCCACAA-TCCCAAG 691
||||| || | || ||| | |||||||||||| ||||| |||||| || ||| |||
Sbjct 700 CAAAATCATTTCGGTGTGATGA-TTCAGTGATGATTATTGATGACTCCAGAAGTCCAAAG 758
Query 692 CCGCAGGATG-A-AGAA-ACGAA-G-GG-TCTGCGCCTCCCACGG-GAGACGTAGGCCTC 744
| || || | | |||| | ||| | || | | | || || || ||| ||| || |||
Sbjct 759 TC-CATGAGGCAGAGAAGA-GAAAGCGGAT-T-CATTTCTCA-GGCGAGGCGTTGGGCTC 813
Query 745 AAGTAGTTAGGCAAACACGACTTAAACTCGCACCTGCGACTGAA-GGTGACA-GCCAACA 802
|||| | ||| |||| ||| ||||| || ||| ||| || | || || |||| | ||||
Sbjct 814 AAGTCGATAGACAAATACGTCTTAAGCTAGCAGCTGAGA-TCAAAGGCGACATGA-AACA 871
Query 803 GCTGAAGTGGTTTTGTGATGCATGTAAAGGAATTCCACAGCCGATGCATCC 853
| |||| ||||||| ||| |||||||||||| |||||||||| ||| ||||
Sbjct 872 GATGAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACAGCCAATGAATCC 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5