BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930355
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23290.2 | Symbols: LSH4 | Protein of unknown function (DUF6... 977 0.0
> AT3G23290.2 | Symbols: LSH4 | Protein of unknown function (DUF640)
| chr3:8326825-8328132 FORWARD LENGTH=843
Length=843
Score = 977 bits (529), Expect = 0.0
Identities = 602/638 (94%), Gaps = 2/638 (0%)
Strand=Plus/Plus
Query 1 CCTTAGATTATCAGATCTTGATATCATGGATCCTATTC-TCGGCTTTATGGGCACAACAA 59
|||||||| ||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 109 CCTTAGATAATCAGATCTTGATATTATGGATCATA-TCATCGGCTTTATGGGCACAACAA 167
Query 60 ACATGTCACATAACACAAACCTTATGATCGCCGCTGCAGCCACAACCACCACCACCTCCT 119
||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||| |
Sbjct 168 ACATGTCACATAACACAAACCTTATGATCGCTGCCGCAGCCACTACCACTACGACCTCTT 227
Query 120 CGTCTTCCTCTTCTTCCTCCGGCGGCTCGGGGACTAACCAGCTGAGCAGGTATGAGAATC 179
||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 228 CGTCTTCCTCTTCGTCCTCCGGAGGCTCGGGGACTAACCAGCTAAGCAGGTACGAGAATC 287
Query 180 AGAAGAGAAGAGATTGGAACACTTTCGGACAATATCTCCGCAATCACCGTCCACCACTTT 239
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 288 AGAAGAGAAGAGATTGGAACACTTTCGGACAGTATCTACGCAATCACCGTCCACCACTTT 347
Query 240 CTCTCTCCCGTTGTAGTGGTGCTCATGTTCTTGAATTCCTCAGGTACCTCGACCAATTCG 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CTCTCTCCCGTTGCAGTGGTGCTCATGTTCTTGAATTCCTCAGGTACCTCGACCAATTCG 407
Query 300 GCAAGACTAAGGTTCACACACACCTATGTCCGTTCTTCGGGCACCCAAACCCACCAGCAC 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 408 GCAAGACTAAGGTTCACACACACCTATGTCCGTTCTTCGGACACCCAAACCCACCAGCAC 467
Query 360 CATGTGCCTGTCCACTCCGACAAGCGTGGGGTAGCCTCGACGCACTCATTGGTCGTCTTA 419
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 468 CATGTGCCTGTCCACTCCGACAAGCGTGGGGTAGTCTGGACGCACTCATTGGCCGTCTTA 527
Query 420 GAGCCGCTTTTGAAGAGAACGGTGGTTCTCCAGAGATGAACCCTTTTGGTGCACGAGCCG 479
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 528 GAGCTGCTTTTGAAGAGAACGGTGGTTCACCAGAGACGAACCCTTTTGGTGCACGAGCCG 587
Query 480 TTCGACTCTACCTAAGGGAAGTGCGTGACTCGCAGGCTAAAGCACGTGGAATCAGCTATG 539
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 588 TTCGACTCTACCTAAGGGAAGTACGTGACTCGCAGGCTAAAGCACGTGGGATCAGCTATG 647
Query 540 AAAAGAAGAAGCGGAAGCGACCTCCCCCGCCGCTACCACCGGCTTAGCCGGCGATTTCAA 599
|||| |||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 648 AAAAAAAGAAGCGCAAGCGACCTCCTCCGCCACTACCACCGGCTCAGCCGGCGATTTCAA 707
Query 600 GTAGCCCTAATTAGCACTAAGTCATGAGAAAAATGTTT 637
||||||||||||| || ||||||||||| || ||||||
Sbjct 708 GTAGCCCTAATTAACATTAAGTCATGAGTAAGATGTTT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5