BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930371 Length=984 Score E Sequences producing significant alignments: (Bits) Value AT3G23420.1 | Symbols: | F-box and associated interaction doma... 442 3e-123 AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitinatio... 311 9e-84 AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 243 3e-63 AT3G24580.1 | Symbols: | F-box and associated interaction doma... 233 2e-60 AT5G36200.1 | Symbols: | F-box and associated interaction doma... 178 1e-43 AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 119 6e-26 AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 106 5e-22 AT5G36730.1 | Symbols: | F-box and associated interaction doma... 84.2 2e-15 AT5G36820.1 | Symbols: | F-box and associated interaction doma... 84.2 2e-15 AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 52.8 6e-06 > AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8386273-8387324 REVERSE LENGTH=858 Length=858 Score = 442 bits (239), Expect = 3e-123 Identities = 303/333 (91%), Gaps = 7/333 (2%) Strand=Plus/Plus Query 94 GAGCTTTGCAAAGAAGCACCTTGGTCGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTT 153 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 93 GAGCTTTGCAAAGAAGCACCTTGTTTGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTA 152 Query 154 TACGGTGGTCATGATGATGGGTTTTAGGGTTTATTTGATGCGCATAAATCTTCACAACAA 213 || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 153 TAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAA 212 Query 214 CGTTGAATTAT-TCATGAAA-CGTGAAGGTAAACTTATTTTCCCCGACGCTTCATATCAA 271 ||||||||| | | || ||| |||||| || ||||| ||||||||||||||||| ||||| Sbjct 213 CGTTGAATTGTGT-AT-AAAGCGTGAACGTGAACTTCTTTTCCCCGACGCTTCAGATCAA 270 Query 272 ATCTATGTACGGCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCCTGAAAGACAAC 331 || || || || || ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 271 ATTTACGTCCGTCACGTCTTTCACTGCGACGGTTTATTGTTATGCATCATGAAAGACAAC 330 Query 332 CCTAGGCTTGTGGTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATCGAGAC-ATCAAA 390 ||||||||||||||||| ||||||||| |||| |||||||||||||||||||| | |||| Sbjct 331 CCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAACCCGGTGGATCGAGACTA-CAAA 389 Query 391 TAATTCTCACAGATTAGATGCGTATTCG-ATGC 422 |||| |||| ||||||||||| |||||| |||| Sbjct 390 TAATCCTCAGAGATTAGATGCATATTCGTATGC 422 Score = 392 bits (212), Expect = 3e-108 Identities = 262/285 (92%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 527 GAGACATTTAGGCCGC-GTTTGCC-T--CTGCCGGTTGAGTCGTATCTTGAAGA-TACTC 581 ||||||||| |||||| ||||||| | | ||| |||||| ||||||| |||| | ||| Sbjct 545 GAGACATTTGGGCCGCGGTTTGCCTTCGCCGCCCTTTGAGTGGTATCTTCAAGAGTTCTC 604 Query 582 TGTTATTATCTAGTGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCATATGGATACAT 641 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 605 TGTTATTATCTAATGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCGTATGGATACAT 664 Query 642 TACAGATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCA 701 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 665 TACAGATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCA 724 Query 702 AGTTCTTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTA 761 |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 725 AGTTCTTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTA 784 Query 762 -TGGCTGCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTG 805 || |||||||||||||| ||||||||||||||||||||||||| Sbjct 785 GTGA-TGCAAGTTTCTTCATTGATGAGGAGAAGAAAGTTGCAGTG 828 > AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitination effector family protein | chr3:7114403-7114714 FORWARD LENGTH=312 Length=312 Score = 311 bits (168), Expect = 9e-84 Identities = 271/320 (85%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 647 ATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTC 706 |||||||||||||| |||||||||||||||||||||| | |||||||| |||||||| || Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60 Query 707 TTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTATGGCT 766 ||||||||||| ||||||| | |||||| |||| | | ||||||||||||||||||| Sbjct 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCT 120 Query 767 GCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTGGTTTTTGAT-AAAGGAAAAAA 825 |||||||||||| |||||| ||||||||| | || ||||||||| || ||| | ||| Sbjct 121 ACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAA-G--CAAA 177 Query 826 GAGGAAGATGATGCGCAATGCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGT 885 || || || || ||| |||||| ||| ||||| |||||||||||||||||||||| Sbjct 178 GA--CAG--GAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGT 233 Query 886 GGATCTTGGAGAA-TCTCCAAACAAAAATCTCCGACCACTTGTGTGCTCTTATGTTCCAA 944 ||||||||||||| | || ||||| | ||||| ||||||||||| |||||||||||||| Sbjct 234 GGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAA 292 Query 945 GTTCAGTGCAACTTGAATAG 964 ||||| |||||||||||||| Sbjct 293 GTTCAATGCAACTTGAATAG 312 > AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | chr3:9184970-9186171 FORWARD LENGTH=1202 Length=1202 Score = 243 bits (131), Expect = 3e-63 Identities = 364/470 (77%), Gaps = 41/470 (9%) Strand=Plus/Plus Query 499 TTTCTTACTCTGTTTTGATTTCACAAGAGAGACATTTAGGCCGCGTTTGCCTCTGCCGGT 558 ||||||| ||||||||||||||||||||||||||||| |||| | |||| |||| ||| | Sbjct 731 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTT 790 Query 559 TGAGTC-GT-A--TCTTGAAGATACTCTGT-TATTATCTAGTGTTAGAGATGAGCAGCTT 613 || || || | ||| |||||| | ||| | | ||||| ||||||||| ||||||||| Sbjct 791 TGTGTTTGTTAAATCT-GAAGATGTTATGTGTGT-ATCTAATGTTAGAGAAGAGCAGCTT 848 Query 614 GCGGTGTTATTTCAGCATATGG-ATACATTACAGATGGAGATCTGGGTGACAACTAAGAT 672 ||||| |||| ||||| ||| ||| || | |||||||||||||| | || ||| ||| Sbjct 849 GCGGTTTTATATCAGCCG-TGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGAT 907 Query 673 TGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGA-TATGAGAGAAC 731 |||||||||| |||||||||||| ||||||| | ||||||||||| || ||| ||| ||| Sbjct 908 TGAGCCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGT-GAGTATAAGAAAAC 966 Query 732 TCACCGGCATTTAC-TCT-ATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATGAGGA 789 ||| ||| | | | | | ||||| |||| || | | ||||||||| ||| ||||| Sbjct 967 TCATTGGCCCTC-CGTTTCA-GTTTT-GTTTG-GG--G-A-GTTTCTTCATTGACGAGGA 1018 Query 790 GAAGAAAGTTGCAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAATGCAGC 849 ||||||||| || |||||||||||||||| | | | | | ||| | |||||| ||| Sbjct 1019 GAAGAAAGTCGCTGTGGTTTTTGATAAAG-ACTACA-A--A-GATAA-GCGCAACATAGC 1072 Query 850 TTACATTGTTGGAGA----GGA-T-G--G-ATCCTTGAAAGAAGTGGATCTTGGAGAATC 900 |||||| ||||||| ||| | | | |||||| ||||||| |||||| |||||||| Sbjct 1073 TTACATCATTGGAGACTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATC 1131 Query 901 T-CCAAACAAAAATCTCCGACC-ACTTGTGTGCTCTTATGTTCCAAGTTC 948 || | | || | | ||| |||| |||||||||||||||||| ||| Sbjct 1132 AGCCTA-CGCAA-TGTGTTACCCACTTATGTGCTCTTATGTTCCAACTTC 1179 > AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8969162-8970298 FORWARD LENGTH=1137 Length=1137 Score = 233 bits (126), Expect = 2e-60 Identities = 363/472 (77%), Gaps = 38/472 (8%) Strand=Plus/Plus Query 499 TTTCTTACTCTGTTTTGATTTCACAAGAGAGACATTTAGGCCGCGTTTGCCTCTGCCG-G 557 ||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||| | Sbjct 681 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGGTCGCGTTTACCTCTGCCGAG 740 Query 558 TTGAGTCGTATCTTGAAGATACTCTGTTA-T-TATCTAGTGTTAGAGATGAGCAGCTTGC 615 | || ||| | || |||||| | || | | |||||||||||||||| ||||||||||| Sbjct 741 -TCAGCCGTGTGTTTTAGATAC-C-GTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTTGC 797 Query 616 GGTGTTATTTCA--GCAT-ATGGATACATTACAGATGGAGATCTGGGTGACAACTAAGAT 672 || |||||||| || | | | |||||| ||||| |||||||||| ||||| || || Sbjct 798 TGTTTTATTTCAGTGC-TCA-AG-TACATTGGAGATGCAGATCTGGGTAACAACCAAAAT 854 Query 673 TGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGATATGAGAGAACT 732 ||||||||| |||||| ||||| ||||||| | |||||| | || ||||| | ||| Sbjct 855 TGAGCCCAATGCGGTGTTGTGGAACAGCAAGGTGTTCTTAGCTGTGGATAT----GCACT 910 Query 733 CACCGGCATTTACTCTATGTTTTC--GTTTATG-GCTGCAAGTTTCTTCACT-GATGAGG 788 || | | || || | | |||| | ||| | ||| | |||||||| | | || |||| Sbjct 911 CA-CTTAAGTT--TC-A-G-TTTCAAG-TTA-GAGCTTCGAGTTTCTTTA-TCGACGAGG 961 Query 789 AGAAGAAAGTTGCAGTGGTTTTTGATAAAGGAAAAAAG--AGGAAG-ATGAT-GCGCAAT 844 |||||| ||||| || |||||||||||| |||||| | | || | | ||||| Sbjct 962 AGAAGAGAGTTGTTGTTGTTTTTGATAAA-GAAAAACGTTATTTAGCGTCCTCTCGCAAC 1020 Query 845 GCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGA-ATCTCC 903 ||||||||| ||||||| ||||||| ||| | || ||||||| |||||| | ||| Sbjct 1021 AAAGCTTACATCGTTGGAGTGGATGGAACCTGGGAACAAGTGGACCTTGGA-ATGTCTGT 1079 Query 904 AAACAAAAATCTCCGA-CCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCA 954 | ||||| | | | |||||||||||||||||||||||||||| |||||| Sbjct 1080 AGACAAATTTGT-TTACCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTGCA 1130 > AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14244106-14246296 REVERSE LENGTH=1416 Length=1416 Score = 178 bits (96), Expect = 1e-43 Identities = 355/472 (75%), Gaps = 50/472 (11%) Strand=Plus/Plus Query 500 TTCTT-ACTCTGTTTTGA-TTTCACAAGAGAGACATTTAGG-CCGCGT-TTGC-CTCTGC 554 ||||| | |||||||||| ||| |||| ||||| |||| || |||||| || | | |||| Sbjct 724 TTCTTGA-TCTGTTTTGACTTT-ACAACAGAGAGATTT-GGACCGCGTCTT-CAC-CTGC 778 Query 555 CGGTTGAGTCGT-A-TCTTGAAGATACTCTG-TTATTATCTAGTGTTAGAGATGAGCAGC 611 | || | || | | || ||| |||||| || || | |||||||||||||| || |||| Sbjct 779 CCTTTCACTC-TCATTC-TGATGATACTGTGATT-CTCTCTAGTGTTAGAGAAGAACAGC 835 Query 612 TTGCGGTGTT-ATTTCAGC-ATATGGATACATTACA-GATGGAGATCTGGGTGACAACTA 668 |||||||||| | || ||| | | ||| | | | ||||||||| ||||| || |||| Sbjct 836 TTGCGGTGTTGA-TTAAGCGCT-TCGATTTA-TGGAGGATGGAGATTTGGGTTACGACTA 892 Query 669 AGATTGAGCCCAA-CACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGATATGAGA 727 |||||||||| || | ||| || |||| | |||||| |||||| | |||||||||| | Sbjct 893 AGATTGAGCCTAAGGA-GGTCTCATGGA--A-CAAGTTGTTCTTAGCGGTTGATATGATA 948 Query 728 GAACTCA-C-CGGCATTTACTCTATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATG 785 ||| | | | || ||| || | ||||| | | || | || ||||| |||| ||| | Sbjct 949 CCACTGATCACTGC-TTT--TC-A-GTTTT-G-TAAT-G-TG--AGTTTTTTCATTGACG 997 Query 786 AGGAGAAGAAAGTTG-CAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAAT 844 || ||||||| || | | |||||| ||| |||| | | | | | || | || || Sbjct 998 AGAAGAAGAATGTCGTC-GTGGTTCTTGGTAAA-G--ATGTGTTG-A-AT-ACACGAAAC 1050 Query 845 GCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGAATCTCCA 904 |||| | ||| ||||| | ||||||| ||| ||| |||||||||||||||||||| || Sbjct 1051 ATAGCTAATATTATTGGAAATGATGGATACTTTAAACAAGTGGATCTTGGAGAATCTACA 1110 Query 905 AACAAAAATCTCCGA-CCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 955 |||||| || | | |||||||||||||||||||||||||||||||||||| Sbjct 1111 AACAAATAT-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161 > AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | chr5:10513366-10514577 FORWARD LENGTH=1212 Length=1212 Score = 119 bits (64), Expect = 6e-26 Identities = 147/186 (79%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 201 ATCTTCACAACAACGTTGAATTAT-TCAT-GAAACGTGAAGGTAAACTTATTTTCCCCGA 258 ||||| || |||||||||||| || | || | | | ||||| |||||||||| || || Sbjct 282 ATCTTAACGACAACGTTGAATCATGT-ATCG-AGCATGAAGCTAAACTTATTAGCCTAGA 339 Query 259 CGCTTCATATCAAATCTATGTA-CGGCAAGTCTTTCACTGCGACGGTTTATTGTTATGCA 317 || ||||||| || || | ||| | |||| |||||||||||||||||||||||||||| Sbjct 340 CGATTCATATGAAGTCCAAGTATC-TAAAGTTTTTCACTGCGACGGTTTATTGTTATGCA 398 Query 318 TC-CTGAAAGACAACCCTAGGCTTGTGGTTTGGAACCCGTATTGTGGG-CAAACCCGGTG 375 | | |||||| | ||| ||| | ||||||||||||||||| ||| |||||| ||| Sbjct 399 TTACA-AAAGACCATACTAAGCTCCTAGTTTGGAACCCGTATTG-GGGTCAAACCAAGTG 456 Query 376 GATCGA 381 |||||| Sbjct 457 GATCGA 462 > AT3G22770.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:8047684-8048667 REVERSE LENGTH=984 Length=984 Score = 106 bits (57), Expect = 5e-22 Identities = 90/105 (86%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 284 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC--C-TGA---AAGACAACCCTAGG 337 |||||||||||||||||||||||||||||||||||| | | | ||| ||| ||||| Sbjct 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210 Query 338 CTTGTGGTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATCGAG 382 || |||||||||||||||||||| ||||| ||||||| |||||| Sbjct 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAG 255 > AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14436317-14437549 FORWARD LENGTH=1233 Length=1233 Score = 84.2 bits (45), Expect = 2e-15 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 285 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTTGTG 343 ||||||||||||||||||||||||||||||||||| || | | | | ||||||||| Sbjct 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384 Query 344 GTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATC 379 ||||| || || |||||||||||||| |||| ||| Sbjct 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATC 420 > AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14495617-14496849 FORWARD LENGTH=1233 Length=1233 Score = 84.2 bits (45), Expect = 2e-15 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 285 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTTGTG 343 ||||||||||||||||||||||||||||||||||| || | | | | ||||||||| Sbjct 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384 Query 344 GTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATC 379 ||||| || || |||||||||||||| |||| ||| Sbjct 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATC 420 > AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | chr3:7235948-7237084 REVERSE LENGTH=1137 Length=1137 Score = 52.8 bits (28), Expect = 6e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 334 TAGGCTTGTGGTTTGGAACCCGTATTGT 361 |||||||||||||||||||||||||||| Sbjct 366 TAGGCTTGTGGTTTGGAACCCGTATTGT 393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48174546973 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5