BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930371
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 442 3e-123
AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitinatio... 311 9e-84
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 243 3e-63
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 233 2e-60
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 178 1e-43
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 119 6e-26
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 106 5e-22
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 84.2 2e-15
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 84.2 2e-15
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 52.8 6e-06
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 442 bits (239), Expect = 3e-123
Identities = 303/333 (91%), Gaps = 7/333 (2%)
Strand=Plus/Plus
Query 94 GAGCTTTGCAAAGAAGCACCTTGGTCGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTT 153
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 93 GAGCTTTGCAAAGAAGCACCTTGTTTGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTA 152
Query 154 TACGGTGGTCATGATGATGGGTTTTAGGGTTTATTTGATGCGCATAAATCTTCACAACAA 213
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 153 TAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAA 212
Query 214 CGTTGAATTAT-TCATGAAA-CGTGAAGGTAAACTTATTTTCCCCGACGCTTCATATCAA 271
||||||||| | | || ||| |||||| || ||||| ||||||||||||||||| |||||
Sbjct 213 CGTTGAATTGTGT-AT-AAAGCGTGAACGTGAACTTCTTTTCCCCGACGCTTCAGATCAA 270
Query 272 ATCTATGTACGGCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCCTGAAAGACAAC 331
|| || || || || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 271 ATTTACGTCCGTCACGTCTTTCACTGCGACGGTTTATTGTTATGCATCATGAAAGACAAC 330
Query 332 CCTAGGCTTGTGGTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATCGAGAC-ATCAAA 390
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 331 CCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAACCCGGTGGATCGAGACTA-CAAA 389
Query 391 TAATTCTCACAGATTAGATGCGTATTCG-ATGC 422
|||| |||| ||||||||||| |||||| ||||
Sbjct 390 TAATCCTCAGAGATTAGATGCATATTCGTATGC 422
Score = 392 bits (212), Expect = 3e-108
Identities = 262/285 (92%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 527 GAGACATTTAGGCCGC-GTTTGCC-T--CTGCCGGTTGAGTCGTATCTTGAAGA-TACTC 581
||||||||| |||||| ||||||| | | ||| |||||| ||||||| |||| | |||
Sbjct 545 GAGACATTTGGGCCGCGGTTTGCCTTCGCCGCCCTTTGAGTGGTATCTTCAAGAGTTCTC 604
Query 582 TGTTATTATCTAGTGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCATATGGATACAT 641
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 605 TGTTATTATCTAATGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCGTATGGATACAT 664
Query 642 TACAGATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCA 701
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 665 TACAGATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCA 724
Query 702 AGTTCTTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTA 761
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 725 AGTTCTTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTA 784
Query 762 -TGGCTGCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTG 805
|| |||||||||||||| |||||||||||||||||||||||||
Sbjct 785 GTGA-TGCAAGTTTCTTCATTGATGAGGAGAAGAAAGTTGCAGTG 828
> AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitination
effector family protein | chr3:7114403-7114714 FORWARD LENGTH=312
Length=312
Score = 311 bits (168), Expect = 9e-84
Identities = 271/320 (85%), Gaps = 10/320 (3%)
Strand=Plus/Plus
Query 647 ATGGAGATCTGGGTGACAACTAAGATTGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTC 706
|||||||||||||| |||||||||||||||||||||| | |||||||| |||||||| ||
Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60
Query 707 TTCTTATCAGTTGATATGAGAGAACTCACCGGCATTTACTCTATGTTTTCGTTTATGGCT 766
||||||||||| ||||||| | |||||| |||| | | |||||||||||||||||||
Sbjct 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCT 120
Query 767 GCAAGTTTCTTCACTGATGAGGAGAAGAAAGTTGCAGTGGTTTTTGAT-AAAGGAAAAAA 825
|||||||||||| |||||| ||||||||| | || ||||||||| || ||| | |||
Sbjct 121 ACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAA-G--CAAA 177
Query 826 GAGGAAGATGATGCGCAATGCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGT 885
|| || || || ||| |||||| ||| ||||| ||||||||||||||||||||||
Sbjct 178 GA--CAG--GAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGT 233
Query 886 GGATCTTGGAGAA-TCTCCAAACAAAAATCTCCGACCACTTGTGTGCTCTTATGTTCCAA 944
||||||||||||| | || ||||| | ||||| ||||||||||| ||||||||||||||
Sbjct 234 GGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAA 292
Query 945 GTTCAGTGCAACTTGAATAG 964
||||| ||||||||||||||
Sbjct 293 GTTCAATGCAACTTGAATAG 312
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 243 bits (131), Expect = 3e-63
Identities = 364/470 (77%), Gaps = 41/470 (9%)
Strand=Plus/Plus
Query 499 TTTCTTACTCTGTTTTGATTTCACAAGAGAGACATTTAGGCCGCGTTTGCCTCTGCCGGT 558
||||||| ||||||||||||||||||||||||||||| |||| | |||| |||| ||| |
Sbjct 731 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTT 790
Query 559 TGAGTC-GT-A--TCTTGAAGATACTCTGT-TATTATCTAGTGTTAGAGATGAGCAGCTT 613
|| || || | ||| |||||| | ||| | | ||||| ||||||||| |||||||||
Sbjct 791 TGTGTTTGTTAAATCT-GAAGATGTTATGTGTGT-ATCTAATGTTAGAGAAGAGCAGCTT 848
Query 614 GCGGTGTTATTTCAGCATATGG-ATACATTACAGATGGAGATCTGGGTGACAACTAAGAT 672
||||| |||| ||||| ||| ||| || | |||||||||||||| | || ||| |||
Sbjct 849 GCGGTTTTATATCAGCCG-TGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGAT 907
Query 673 TGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGA-TATGAGAGAAC 731
|||||||||| |||||||||||| ||||||| | ||||||||||| || ||| ||| |||
Sbjct 908 TGAGCCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGT-GAGTATAAGAAAAC 966
Query 732 TCACCGGCATTTAC-TCT-ATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATGAGGA 789
||| ||| | | | | | ||||| |||| || | | ||||||||| ||| |||||
Sbjct 967 TCATTGGCCCTC-CGTTTCA-GTTTT-GTTTG-GG--G-A-GTTTCTTCATTGACGAGGA 1018
Query 790 GAAGAAAGTTGCAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAATGCAGC 849
||||||||| || |||||||||||||||| | | | | | ||| | |||||| |||
Sbjct 1019 GAAGAAAGTCGCTGTGGTTTTTGATAAAG-ACTACA-A--A-GATAA-GCGCAACATAGC 1072
Query 850 TTACATTGTTGGAGA----GGA-T-G--G-ATCCTTGAAAGAAGTGGATCTTGGAGAATC 900
|||||| ||||||| ||| | | | |||||| ||||||| |||||| ||||||||
Sbjct 1073 TTACATCATTGGAGACTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATC 1131
Query 901 T-CCAAACAAAAATCTCCGACC-ACTTGTGTGCTCTTATGTTCCAAGTTC 948
|| | | || | | ||| |||| |||||||||||||||||| |||
Sbjct 1132 AGCCTA-CGCAA-TGTGTTACCCACTTATGTGCTCTTATGTTCCAACTTC 1179
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 233 bits (126), Expect = 2e-60
Identities = 363/472 (77%), Gaps = 38/472 (8%)
Strand=Plus/Plus
Query 499 TTTCTTACTCTGTTTTGATTTCACAAGAGAGACATTTAGGCCGCGTTTGCCTCTGCCG-G 557
||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
Sbjct 681 TTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGGTCGCGTTTACCTCTGCCGAG 740
Query 558 TTGAGTCGTATCTTGAAGATACTCTGTTA-T-TATCTAGTGTTAGAGATGAGCAGCTTGC 615
| || ||| | || |||||| | || | | |||||||||||||||| |||||||||||
Sbjct 741 -TCAGCCGTGTGTTTTAGATAC-C-GTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTTGC 797
Query 616 GGTGTTATTTCA--GCAT-ATGGATACATTACAGATGGAGATCTGGGTGACAACTAAGAT 672
|| |||||||| || | | | |||||| ||||| |||||||||| ||||| || ||
Sbjct 798 TGTTTTATTTCAGTGC-TCA-AG-TACATTGGAGATGCAGATCTGGGTAACAACCAAAAT 854
Query 673 TGAGCCCAACACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGATATGAGAGAACT 732
||||||||| |||||| ||||| ||||||| | |||||| | || ||||| | |||
Sbjct 855 TGAGCCCAATGCGGTGTTGTGGAACAGCAAGGTGTTCTTAGCTGTGGATAT----GCACT 910
Query 733 CACCGGCATTTACTCTATGTTTTC--GTTTATG-GCTGCAAGTTTCTTCACT-GATGAGG 788
|| | | || || | | |||| | ||| | ||| | |||||||| | | || ||||
Sbjct 911 CA-CTTAAGTT--TC-A-G-TTTCAAG-TTA-GAGCTTCGAGTTTCTTTA-TCGACGAGG 961
Query 789 AGAAGAAAGTTGCAGTGGTTTTTGATAAAGGAAAAAAG--AGGAAG-ATGAT-GCGCAAT 844
|||||| ||||| || |||||||||||| |||||| | | || | | |||||
Sbjct 962 AGAAGAGAGTTGTTGTTGTTTTTGATAAA-GAAAAACGTTATTTAGCGTCCTCTCGCAAC 1020
Query 845 GCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGA-ATCTCC 903
||||||||| ||||||| ||||||| ||| | || ||||||| |||||| | |||
Sbjct 1021 AAAGCTTACATCGTTGGAGTGGATGGAACCTGGGAACAAGTGGACCTTGGA-ATGTCTGT 1079
Query 904 AAACAAAAATCTCCGA-CCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCA 954
| ||||| | | | |||||||||||||||||||||||||||| ||||||
Sbjct 1080 AGACAAATTTGT-TTACCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTGCA 1130
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 178 bits (96), Expect = 1e-43
Identities = 355/472 (75%), Gaps = 50/472 (11%)
Strand=Plus/Plus
Query 500 TTCTT-ACTCTGTTTTGA-TTTCACAAGAGAGACATTTAGG-CCGCGT-TTGC-CTCTGC 554
||||| | |||||||||| ||| |||| ||||| |||| || |||||| || | | ||||
Sbjct 724 TTCTTGA-TCTGTTTTGACTTT-ACAACAGAGAGATTT-GGACCGCGTCTT-CAC-CTGC 778
Query 555 CGGTTGAGTCGT-A-TCTTGAAGATACTCTG-TTATTATCTAGTGTTAGAGATGAGCAGC 611
| || | || | | || ||| |||||| || || | |||||||||||||| || ||||
Sbjct 779 CCTTTCACTC-TCATTC-TGATGATACTGTGATT-CTCTCTAGTGTTAGAGAAGAACAGC 835
Query 612 TTGCGGTGTT-ATTTCAGC-ATATGGATACATTACA-GATGGAGATCTGGGTGACAACTA 668
|||||||||| | || ||| | | ||| | | | ||||||||| ||||| || ||||
Sbjct 836 TTGCGGTGTTGA-TTAAGCGCT-TCGATTTA-TGGAGGATGGAGATTTGGGTTACGACTA 892
Query 669 AGATTGAGCCCAA-CACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGATATGAGA 727
|||||||||| || | ||| || |||| | |||||| |||||| | |||||||||| |
Sbjct 893 AGATTGAGCCTAAGGA-GGTCTCATGGA--A-CAAGTTGTTCTTAGCGGTTGATATGATA 948
Query 728 GAACTCA-C-CGGCATTTACTCTATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATG 785
||| | | | || ||| || | ||||| | | || | || ||||| |||| ||| |
Sbjct 949 CCACTGATCACTGC-TTT--TC-A-GTTTT-G-TAAT-G-TG--AGTTTTTTCATTGACG 997
Query 786 AGGAGAAGAAAGTTG-CAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAAT 844
|| ||||||| || | | |||||| ||| |||| | | | | | || | || ||
Sbjct 998 AGAAGAAGAATGTCGTC-GTGGTTCTTGGTAAA-G--ATGTGTTG-A-AT-ACACGAAAC 1050
Query 845 GCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGAATCTCCA 904
|||| | ||| ||||| | ||||||| ||| ||| |||||||||||||||||||| ||
Sbjct 1051 ATAGCTAATATTATTGGAAATGATGGATACTTTAAACAAGTGGATCTTGGAGAATCTACA 1110
Query 905 AACAAAAATCTCCGA-CCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 955
|||||| || | | ||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACAAATAT-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 119 bits (64), Expect = 6e-26
Identities = 147/186 (79%), Gaps = 10/186 (5%)
Strand=Plus/Plus
Query 201 ATCTTCACAACAACGTTGAATTAT-TCAT-GAAACGTGAAGGTAAACTTATTTTCCCCGA 258
||||| || |||||||||||| || | || | | | ||||| |||||||||| || ||
Sbjct 282 ATCTTAACGACAACGTTGAATCATGT-ATCG-AGCATGAAGCTAAACTTATTAGCCTAGA 339
Query 259 CGCTTCATATCAAATCTATGTA-CGGCAAGTCTTTCACTGCGACGGTTTATTGTTATGCA 317
|| ||||||| || || | ||| | |||| ||||||||||||||||||||||||||||
Sbjct 340 CGATTCATATGAAGTCCAAGTATC-TAAAGTTTTTCACTGCGACGGTTTATTGTTATGCA 398
Query 318 TC-CTGAAAGACAACCCTAGGCTTGTGGTTTGGAACCCGTATTGTGGG-CAAACCCGGTG 375
| | |||||| | ||| ||| | ||||||||||||||||| ||| |||||| |||
Sbjct 399 TTACA-AAAGACCATACTAAGCTCCTAGTTTGGAACCCGTATTG-GGGTCAAACCAAGTG 456
Query 376 GATCGA 381
||||||
Sbjct 457 GATCGA 462
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 106 bits (57), Expect = 5e-22
Identities = 90/105 (86%), Gaps = 6/105 (6%)
Strand=Plus/Plus
Query 284 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC--C-TGA---AAGACAACCCTAGG 337
|||||||||||||||||||||||||||||||||||| | | | ||| ||| |||||
Sbjct 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210
Query 338 CTTGTGGTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATCGAG 382
|| |||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAG 255
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 84.2 bits (45), Expect = 2e-15
Identities = 80/96 (83%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 285 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTTGTG 343
||||||||||||||||||||||||||||||||||| || | | | | |||||||||
Sbjct 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384
Query 344 GTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATC 379
||||| || || |||||||||||||| |||| |||
Sbjct 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATC 420
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 84.2 bits (45), Expect = 2e-15
Identities = 80/96 (83%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 285 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTTGTG 343
||||||||||||||||||||||||||||||||||| || | | | | |||||||||
Sbjct 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384
Query 344 GTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATC 379
||||| || || |||||||||||||| |||| |||
Sbjct 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATC 420
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 334 TAGGCTTGTGGTTTGGAACCCGTATTGT 361
||||||||||||||||||||||||||||
Sbjct 366 TAGGCTTGTGGTTTGGAACCCGTATTGT 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5