BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930374

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47389.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   187    9e-47


> AT1G47389.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 12 Blast hits 
to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:17378652-17379374 FORWARD 
LENGTH=723
Length=723

 Score =  187 bits (101),  Expect = 9e-47
 Identities = 194/237 (82%), Gaps = 13/237 (5%)
 Strand=Plus/Plus

Query  336  TTGTCCGTGTGATGATTATGTGGTTCATTCACGGTGTTTTTCCGGGTATGCTCGG-CGTT  394
            |||||||||||||||| || ||||||||||||||||||||||||||||||| ||| | ||
Sbjct  155  TTGTCCGTGTGATGATAATATGGTTCATTCACGGTGTTTTTCCGGGTATGCCCGGTC-TT  213

Query  395  TTC-GATCTGG-AGACAATAATTGTCGACAACGATTTAGTGAAAATTTGCAATCCT-CGA  451
             || | ||||| || ||||| ||| | ||| || |||| || ||||||||   ||| |||
Sbjct  214  CTCAG-TCTGGCAG-CAATAGTTGCCAACATCGTTTTAATGCAAATTTGCGC-CCTTCGA  270

Query  452  TGCATATGGGATCCCGGAATTACATCGAAGGCATTTGTCGTGAAGATCTCCAACGACGTC  511
             |||| ||| | |||||||| || ||| || |||||| |||||||||||| ||| |||||
Sbjct  271  CGCATGTGGAACCCCGGAATCACTTCGGAGACATTTGCCGTGAAGATCTCTAACAACGTC  330

Query  512  TATGGTGTG-GAATGTAC-AATAGGATGGGCTTACACCGGTATCAAGCCAAACTTTT  566
            | |||| || || ||||  ||| ||||||| ||||  ||||||||||||||| ||||
Sbjct  331  TTTGGTTTGAGA-TGTATGAAT-GGATGGGATTACTTCGGTATCAAGCCAAA-TTTT  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28683697937


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5