BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930387

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23605.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   610    4e-174


> AT3G23605.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr3:8476571-8477392 FORWARD LENGTH=822
Length=822

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 421/462 (91%), Gaps = 18/462 (4%)
 Strand=Plus/Plus

Query  1    TGCTCGAGTGTGAATCAATGATGGAGAAATTATCACCGTTCATGGACATCGCCTCTTTGG  60
            ||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct  106  TGCTCGAGTGTCAATCAATGATGGAGAAATTATCACCGTTCGTAGACGTCGCCTCTCTGG  165

Query  61   AAATCGAGTCTCTACGAAGAATCAAACGCCCGAAACGCTTCTCT---GAAGAATC---AG  114
            ||||||||||||| ||||||||||||||||||||||||||||||   ||||||||   ||
Sbjct  166  AAATCGAGTCTCTGCGAAGAATCAAACGCCCGAAACGCTTCTCTGAAGAAGAATCAGAAG  225

Query  115  AAACCGAG---ACGATGACTTCATCAAACGCGGTTTTCGGATTCCCTCACTTACCAGAAG  171
            ||||||||   |||| || ||||||||||||||| |||||||||||| ||||||||||||
Sbjct  226  AAACCGAGAATACGACGAATTCATCAAACGCGGTATTCGGATTCCCTAACTTACCAGAAG  285

Query  172  AACCAAATCGCGATTTGGATCAAAGCGTTTTGTGTAGAATCCGCGTTCGATTACCAGATG  231
            |||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct  286  AACCGAATCGCGATATGGATCAAAGCGTTTTGTGCAGAATCTGCGTTCGATTACCAGATG  345

Query  232  GGAGAAGAATACAGAGGAGTTTCTTAAAGAGTGAATCTGTTCAGCTTCTTTGGTCGTTTT  291
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  GGAGAAGAATACAGAGAAGTTTCTTAAAGAGTGAATCTGTTCAGCTTCTTTGGTCGTTTT  405

Query  292  GTTATTCGCAGATTG---ATGAATCT---GAGAGAAAGCG---TTTTAAATTGATTCAAG  342
            |||||||||||||||   ||||||||   |||||||||||   |||||||||||||||||
Sbjct  406  GTTATTCGCAGATTGGTGATGAATCTTCTGAGAGAAAGCGGCGTTTTAAATTGATTCAAG  465

Query  343  CGTTTCCTGGGGAATATAAGAATCTTTATTTTGGATCTAATACGACTTTTGAAGAATCTG  402
             |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  466  GGTTTCCTGGGGATTATAAGAATCTTTATTTTGGATCTAATACTACTTTTGAACAATCTG  525

Query  403  GGCTTGCGAATTCTTTGGTTTCGGTTACTTGGGTCTGAAGAA  444
            ||||||| ||||| |||||||| ||||||||| |||||||||
Sbjct  526  GGCTTGCTAATTCCTTGGTTTCTGTTACTTGGCTCTGAAGAA  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5