BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930388
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23610.3 | Symbols: DSPTP1 | dual specificity protein phosph... 920 0.0
> AT3G23610.3 | Symbols: DSPTP1 | dual specificity protein phosphatase
1 | chr3:8478122-8479841 FORWARD LENGTH=1035
Length=1035
Score = 920 bits (498), Expect = 0.0
Identities = 547/571 (96%), Gaps = 2/571 (0%)
Strand=Plus/Plus
Query 30 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCGTCTTCTTCGTTACCAGGAA 89
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 160 TGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCATCTTCTTCGTTACCAGGAA 219
Query 90 TAGATAAGTATAACGAAAAGGTGAAAAATCAGATACAAGCACTTGTTCGTGTTATTAAAG 149
|||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 220 TAGAAAAGTATAATGAAAAGGTGAAGAATCAGATACAAGCTCTTGTTCGTGTTATTAAAG 279
Query 150 TTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGGGTCTTTATCTTG 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGGGTCTTTATCTTG 339
Query 210 GATCTGTTGCTGCAGCTTGTAACAAGAATGTTTTGAAATCTTACAATGTTACACATATCT 269
|||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 340 GATCTGTTGCAGCAGCTAGTAATAAGAATGTTTTGAAATCTTACAATGTTACACATATTT 399
Query 270 TGACTGTTGCTAGTTCTTTGAGACCAGCTCATCCTGATGACTTTGTTTACAAGGTTGTTC 329
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TGACTGTTGCTAGTTCGTTGAGACCAGCTCATCCTGATGACTTTGTTTACAAGGTTGTTC 459
Query 330 GAGTTGTGGATAAGGAAGACACAAATTTGGAAATGTACTTTGATGAGTGTGTTGATTTCA 389
|||| |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 460 GAGTCGTGGATAAGGAAGATACAAATCTAGAAATGTACTTCGATGAGTGTGTTGATTTCA 519
Query 390 TTGATGAAGCCAAGAGACAAGGTGGTAGTGTTCTTGTTCATTGCTTTGTTGGCAAATCAC 449
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 520 TTGATGAAGCCAAGAGACAAGGCGGTAGTGTTCTTGTTCATTGCTTTGTTGGCAAATCAC 579
Query 450 GGAGTGTCACTATAGTTGTTGCTTACCTCATGAAGAAACACGGAATGACTTTAGCCCAAG 509
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 580 GGAGTGTCACTATAGTTGTTGCTTACCTCATGAAGAAACACGGTATGACTTTAGCTCAAG 639
Query 510 CATCGCAACATGT-AAAGAGCAAAAGACCTGTGGCAAGTCCTAATGCCGGTTTCATCAGA 568
||| ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 640 CATTGCAACATGTTAAA-AGCAAAAGACCCGTGGCAAGTCCTAATGCTGGTTTCATCAGA 698
Query 569 CAGTTACAAGACCTCGAGAAGTCTATGCAAG 599
|| ||||||||||||||||||||||||||||
Sbjct 699 CAATTACAAGACCTCGAGAAGTCTATGCAAG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5