BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930390
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23630.1 | Symbols: ATIPT7, IPT7 | isopentenyltransferase 7 ... 1629 0.0
> AT3G23630.1 | Symbols: ATIPT7, IPT7 | isopentenyltransferase
7 | chr3:8488695-8490210 FORWARD LENGTH=1516
Length=1516
Score = 1629 bits (882), Expect = 0.0
Identities = 982/1031 (95%), Gaps = 3/1031 (0%)
Strand=Plus/Plus
Query 1 CAACaaaaaaaGTCAATCATCATGAAGTTCTCAATCTCAACACTGAAGCAGGTACAACCA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 163 CAACAAAAAAAGTCAATCATCATGAAGTTCTCAATCTCATCACTGAAGCAGGTACAACCA 222
Query 61 ATCTTGAGTTTCAAGAACAAGCTATGTAAGGTCAACGTCAACTCTTTTCTCCATCCCAAA 120
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 223 ATCTTGTGCTTCAAGAACAAGCTATCTAAGGTCAACGTCAACTCTTTTCTCCATCCCAAA 282
Query 121 GAAAAAGTCGTCTTCGTGATGGGAGCTACCGGATCGGGTAAGTCTCGTCTTGCCATCGAC 180
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 283 GAAAAAGTCATCTTTGTGATGGGAGCTACCGGATCGGGTAAGTCTCGTCTCGCCATCGAC 342
Query 181 CTAGCAACTCGTTTTCAAGGAGAGATCATAAACTCCGACAAGATCCAACTCTACAAGGGC 240
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 343 CTAGCAACTCGTTTTCAAGGAGAGATCATAAACTCCGACAAGATTCAACTTTACAAGGGC 402
Query 241 CTCGACGTCCTAACAAACAAAGTCACCCCTAAAGAATGCCGAGGCGTGCCTCACCACTTG 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CTAGACGTCCTAACAAACAAAGTCACCCCTAAAGAATGCCGAGGCGTGCCTCACCACTTG 462
Query 301 CTTGGAGTATTCGACTCCGAAGCCGGAAACATAACAGCCACCGAGTATAGCCGCCTTGCT 360
|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 463 CTTGGAGTATTCGACTCCGAAGCCGGAAACCTAACGGCCACCCAGTATAGCCGCCTTGCG 522
Query 361 TCACAAGAAATCTCAAAACTCTCAGCGAACAACAAGCTTCCCATAGTAGCCGGTGGATCA 420
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TCACAAGCAATCTCGAAACTCTCAGCGAACAACAAGCTTCCCATAGTAGCCGGTGGATCA 582
Query 421 AACTCTTACATCGAAGCACTCGCGAATCATTCCTCGGGGTTTTTGTTAAACAACTACGAC 480
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 583 AACTCTTACATCGAAGCACTTGTTAATCATTCCTCGGGGTTTTTATTAAACAACTACGAT 642
Query 481 TGCTGTTTCATTTGGGTTGATGTTTCCTTACCCGTACTAAACTCCTTTGTCTCAAAACGT 540
|| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 643 TGTTGTTTCATTTGGGTCGACGTTTCCTTACCCGTACTTAACTCCTTTGTCTCAAAACGT 702
Query 541 GTCGACCGCATGATGGAAGCAGGATTACTTGAAGAAGTAAGAGAAATGTTCAATCCAAAA 600
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 703 GTCGACCGCATGATGGAAGCAGGATTACTCGAAGAAGTAAGAGAAGTGTTCAATCCAAAA 762
Query 601 GCGAATTACTCCGTAGGGATAAGACGAGCTATCGGAGTCCCCGAGCTCCACGAATATTTA 660
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 763 GCGAATTACTCCGTAGGGATACGACGAGCTATCGGAGTCCCCGAGCTCCATGAATATTTA 822
Query 661 CGTAACGAATCTCTAGTGGACCGTGCCACACAAAGTAAAATGCTTGACGTAGCAGTTAAA 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 823 CGTAACGAATCTCTAGTGGACCGTGCCACAAAAAGTAAAATGCTTGACGTAGCCGTTAAA 882
Query 721 AATATCAAAAAGAACACAGAGATATTAGCGTGTCGGCAGTTAAAAAAGATTCAACGGCTT 780
||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 883 AATATCAAAAAGAACACTGAGATTTTAGCTTGTCGACAGTTAAAAAAGATTCAACGGCTT 942
Query 781 CACAAGAAGTGGAAGTTGTCTATGCACCGTGTGGATGCAACCGAGGTGTTCTTGAAACGC 840
||||||||||||||| |||||||||| ||||| || || || ||||||||||||||||||
Sbjct 943 CACAAGAAGTGGAAGATGTCTATGCATCGTGTTGACGCCACTGAGGTGTTCTTGAAACGC 1002
Query 841 AACGTAGAAGAACAAGACGAGGCTTGGGAGAATCTTGTAGCTAGACCAAGCGAGAGAATC 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1003 AACGTAGAAGAACAAGACGAGGCTTGGGAGAATCTTGTAGCGAGACCAAGCGAGAGAATC 1062
Query 901 GTCGACAAGTTTTATAATAATAA---CCAACTGAAAAATGATGATGTTGAGCACTGTTTG 957
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1063 GTCGATAAGTTTTATAATAATAATAACCAACTGAAAAATGATGATGTTGAGCACTGTTTG 1122
Query 958 GCGGCGTCTTATGGCGGAGGAACTGGAAGTAGAGCCCACAATATGATATGAAAAGTTTTG 1017
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1123 GCGGCATCTTACGGCGGAGGAAGTGGAAGTAGAGCCCACAATATGATATGAAAAGTTTTG 1182
Query 1018 TCATTGATCAT 1028
|||||||||||
Sbjct 1183 TCATTGATCAT 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5