BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930400
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23645.1 | Symbols: | Encodes a Protease inhibitor/seed sto... 294 5e-79
> AT3G23645.1 | Symbols: | Encodes a Protease inhibitor/seed storage/LTP
family protein [pseudogene] | chr3:8509762-8510165
REVERSE LENGTH=404
Length=404
Score = 294 bits (159), Expect = 5e-79
Identities = 192/208 (92%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 337 GTTATGAAGATTTGATTTATTGTGTTACGTCTCTAAGGCTGAATTCACCATTTATCCCAC 396
|||||||||||||||||||| ||||||||||||||||||| |||||| || ||||||| |
Sbjct 104 GTTATGAAGATTTGATTTATCGTGTTACGTCTCTAAGGCTCAATTCA-CACTTATCCCTC 162
Query 397 CGATCCCAGAATGTTGTAAGAATTTAAAAATTGATAAGATGTATTGCCTTTGTGATGCTG 456
||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 163 TGATCCCATAGTGTTGTAAAAATTTAAAAATTGATAACATGTATTGCCTCTGTGATGCTG 222
Query 457 TCAATCCTACTTTTGGTGAACGTTTTGACGTAAAAAAGCTCGGCAAACTGTCTCACGCAT 516
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 223 TCAATCCTACTTTTGCCGAACGTTTTGACGTAAAAAAGCTCGGCAAACTGTCTCACGCGT 282
Query 517 GTGGTGATCTATTAGCTCCTGGCTCTTA 544
| |||||||||||||||| |||||||||
Sbjct 283 GCGGTGATCTATTAGCTCATGGCTCTTA 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5