BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930408
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-... 717 0.0
> AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8715236-8718211 REVERSE
LENGTH=1729
Length=1729
Score = 717 bits (388), Expect = 0.0
Identities = 420/436 (96%), Gaps = 0/436 (0%)
Strand=Plus/Plus
Query 448 GGGAGACCAAGCGTCGATCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACT 507
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GGGAGACCAAGCGTCAATCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACT 938
Query 508 CCTACAATGTCTAGAATCACAGAAGCGTCGAAGAATCCTAGGAGAAACCGGTAGGGACAT 567
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 939 CCTACAATGTCTTGAATCACAGAAGCGTCGAAGAATCTTAGGAGAAACCGGTAGGGACAT 998
Query 568 GACCACGACAACGACTTCTTCTTCTTCTCCCATAACTGCGGTAGCTAACCAAACACAACC 627
||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 999 GACAACGACAACGACTTCTTCTTCTTCTCCCATAACTACGGTAGCGAACCAAGCACAACC 1058
Query 628 GCTCATTATTACTGGTAATGTAACCGAACTAGAGGGCGGAGGAGGGCTTCGGGAGGAGAC 687
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1059 GCTCATTATTACGGGAAATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGGAGGAGAC 1118
Query 688 CGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGATGCCAT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1119 TGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGACGCCAT 1178
Query 748 GATCAAGATACTTTCAAGAAGAAGGCCAGGACAATTGATTAAGACTATAGCTGCTTTGGA 807
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1179 GATCAAGATACTTTCAAGAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTGCTTTGGA 1238
Query 808 GGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 GGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTA 1298
Query 868 CTCATTTAATGTCAAG 883
||| ||||||||||||
Sbjct 1299 CTCCTTTAATGTCAAG 1314
Score = 448 bits (242), Expect = 6e-125
Identities = 256/263 (97%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 186 CACAACCGCTCATTATTACTGGAAATGTAACCGAACTAGAGGGCGGAGGAGGGCTTCGGG 245
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1052 CACAACCGCTCATTATTACGGGAAATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGG 1111
Query 246 AGGAGACCGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTG 305
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 AGGAGACTGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTG 1171
Query 306 ACGCCATGATCAAGATACTTTCAAGAAGAAGGCCAGGACAATTGATTAAGACTATAGCTG 365
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1172 ACGCCATGATCAAGATACTTTCAAGAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTG 1231
Query 366 CTTTGGAGGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 CTTTGGAGGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCG 1291
Query 426 TCCTCTACTCATTTAATGTCAAG 448
|||||||||| ||||||||||||
Sbjct 1292 TCCTCTACTCCTTTAATGTCAAG 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5