BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930412
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 394 6e-109
AT3G25090.1 | Symbols: | F-box associated ubiquitination effec... 289 3e-77
AT3G23685.1 | Symbols: | F-box associated ubiquitination effec... 187 1e-46
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 89.8 3e-17
AT5G41500.1 | Symbols: | F-box and associated interaction doma... 78.7 7e-14
AT3G16880.1 | Symbols: | F-box and associated interaction doma... 63.9 2e-09
AT3G03405.1 | Symbols: | F-box associated ubiquitination effec... 56.5 3e-07
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 52.8 4e-06
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 394 bits (213), Expect = 6e-109
Identities = 408/496 (82%), Gaps = 38/496 (8%)
Strand=Plus/Plus
Query 135 TGCTGCTGAAAA-GAACGCAAATTTAGAA-GAAGTCTTCACCT-CTAGCATAATCTGTTT 191
|||||| |||| ||||| | || || || |||||||| || | || ||||||||||
Sbjct 126 TGCTGC-AAAAAGGAACGTAGATGTA-AATGAAGTCTT-TGCTAATCGCTTAATCTGTTT 182
Query 192 CGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCATCTGTCGTTTAGTACTGATGGGCA 251
|||||||||||||||||||||||||| ||||||| |||| ||||||| || ||||||
Sbjct 183 TGATTTTACAAGTGAGAGATTTGGTCCTCTTCTGCCTCTGCCGTTTAG---TGGTGGGCA 239
Query 252 TCA-TGACTATATTACCTTGTCTTGTGTTAGAGAAGAGAAACTTGCGGTTTTACTTCA-C 309
| | ||||| ||| || || |||||||||||||||||||| ||||||||||||||||| |
Sbjct 240 T-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTTCAGC 298
Query 310 TACAACAAATCAAATCCATACAAGC-T---TT-TC--TTTTG-----GATTGAGATTGAA 357
|| | ||||||||||||| ||| | || || || | |||||||| || |
Sbjct 299 -ACGATGAATCAAATCCATATGAGCTTGACTTATCGATTACGACCAAGATTGAGACTGGA 357
Query 358 GAGGTGTCGTGGAG-AAGGTTCTTGAGAGTGG---CAACTGGATTTGGTATTTATGTTCC 413
||||||| |||||| || |||||||||||||| || ||||||||| || |||||||||
Sbjct 358 GAGGTGTTGTGGAGCAA-GTTCTTGAGAGTGGAAACAGCTGGATTTGATAGTTATGTTCC 416
Query 414 AT-TTATAAATGGAATTTTCTTCATTGACGAGGAGAAGAAAATCGTCATTGGTTTTGATA 472
| |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 417 -TATTATAAATGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTTGA-A 474
Query 473 -ACGATAATCGCCACAGAGTTATTGTCATTGGAGAGGCTAAATACATT-AGGGGATTCGA 530
| | |||||||||| | ||| |||||||||||||| |||| || |||| ||| ||
Sbjct 475 GATGGGAATCGCCACACAATTAACATCATTGGAGAGGCTGGATAC-TTGAGGGCATTGGA 533
Query 531 TCTCGTTAGAGATTTTGGAGACC-AAGAATGTAAGACAGATTTGTGCTCTTATGTTCCAA 589
||||||| |||||| |||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 534 TCTCGTTGGAGATTATGGAGACCAAAG-ATGTAAGACAGATCTGTGCTCTTATGTTCCAA 592
Query 590 GTTTAGTGCAAATCAA 605
||||||||||||||||
Sbjct 593 GTTTAGTGCAAATCAA 608
> AT3G25090.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:9140039-9141094 REVERSE LENGTH=978
Length=978
Score = 289 bits (156), Expect = 3e-77
Identities = 295/358 (82%), Gaps = 26/358 (7%)
Strand=Plus/Plus
Query 269 TGTCTTG-TGTTAGAGAAGAGAAACTTGCGGTTTTACTTCA-CTACAACAAATCAAATCC 326
||| ||| | ||| | ||||||| ||||||||||||||||| | || | ||||||||||
Sbjct 568 TGTTTTGATTTTACAAAAGAGAAGCTTGCGGTTTTACTTCAGC-ACGATGAATCAAATCC 626
Query 327 ATACAAGCTT---TTCT---TT-----T-GGATTGAGATTGAAGAGGTGTCGTGGAG-AA 373
||| ||||| || | || | |||||||| |||||||||| |||||| ||
Sbjct 627 ATATGAGCTTGACTTGTGGATTACAACTAAGATTGAGACAGAAGAGGTGTTGTGGAGCAA 686
Query 374 GGTTCTTGAGAGTGG---CAACTGGATTTGGTATTTATGTTCCATTTATAAATGGAATTT 430
|||||||||||||| || |||| ||| || ||||||||| ||||||| ||||| ||
Sbjct 687 -GTTCTTGAGAGTGGAAACAGCTGGTTTTAATAGTTATGTTCCTTTTATAAGTGGAAGTT 745
Query 431 TCTTCATTGACGAGGAGAAGAAAATCGTCATTGGTTTTGAT-AACGATAATCGCCACAGA 489
||||||||||||||||||||||| ||| | ||||||||||| |||| ||| ||||| |||
Sbjct 746 TCTTCATTGACGAGGAGAAGAAAGTCGCCTTTGGTTTTGATGAACG-TAACCGCCAGAGA 804
Query 490 GTTATTGTCATTGGAGAGGCTAAATACATT-AGGGGATTCGATCTCGTTAGAGATTTTGG 548
||||||||||||||||||||| |||| || |||||||| ||||||||| | ||||||||
Sbjct 805 GTTATTGTCATTGGAGAGGCTGGATAC-TTGAGGGGATTGGATCTCGTTGGGGATTTTGG 863
Query 549 AGACC-AAGAATGTAAGACAGATTTGTGCTCTTATGTTCCAAGTTTAGTGCAAATCAA 605
||||| ||| |||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 864 AGACCAAAG-CTGTAAGCCAGATCTATGCTCTTATGTTCCAAGTTTAGTGCAAATCAA 920
> AT3G23685.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8527239-8528317 FORWARD LENGTH=993
Length=993
Score = 187 bits (101), Expect = 1e-46
Identities = 179/216 (83%), Gaps = 7/216 (3%)
Strand=Plus/Plus
Query 135 TGCTGCTGAAAAGAACGCAAATTTAGAAGAAGTCTTCACCTCTAGCATAATCTGTTTCGA 194
|||||| |||| ||||| | || | || |||||||| || | || |||||||||| ||
Sbjct 510 TGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCTTGGCCGATCGCTTAATCTGTTTTGA 569
Query 195 TTTTACAAGTGAGAGATTTGGTCCGCTTCTGCATCTGTCGTTTAGTACTGATGGGCATCA 254
|||||||||||||||||||||||||||||||| |||| |||||||| | ||||||| |
Sbjct 570 TTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGTG--G-TGGGCAT-A 625
Query 255 T-GACTATATTACCTTGTCTTGTGTTAGAGAAGAGAAACTTGCGGTTTTACTTCA-CTAC 312
| |||| ||| || || |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 626 TTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTTCAGC-AC 684
Query 313 AACAAATCAAATCCATACAAGCTTTTCTTTTGGATT 348
| ||||||||||||| ||||| ||| ||||||
Sbjct 685 GATGAATCAAATCCATATGAGCTTGACTTATGGATT 720
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 89.8 bits (48), Expect = 3e-17
Identities = 103/128 (80%), Gaps = 10/128 (8%)
Strand=Plus/Plus
Query 180 CATAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCATCTGTCGTTTAG 239
|||||||||||| |||||||||||||||||||||||||||||| ||| | || ||||| |
Sbjct 714 CATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTATGCCTTTGCCGTTT-G 772
Query 240 T-ACTGATGGGCATCATGA--C-TATATTAC-CTTGTCTTGTGTTAGAGAAGAGAAACTT 294
| | ||| | || || | | | | || || |||||||||||||||||||| |||
Sbjct 773 TTA--GATATACGTCCGGAAGCCT-TGTGACTCTA-TCTTGTGTTAGAGAAGAGAAGCTT 828
Query 295 GCGGTTTT 302
||||||||
Sbjct 829 GCGGTTTT 836
Score = 63.9 bits (34), Expect = 2e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 572 TGTGCTCTTATGTTCCAAGTTTAGTGCAAATCAA 605
||||||||||||||||||||||||||||||||||
Sbjct 1103 TGTGCTCTTATGTTCCAAGTTTAGTGCAAATCAA 1136
> AT5G41500.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16604002-16605213 FORWARD LENGTH=1212
Length=1212
Score = 78.7 bits (42), Expect = 7e-14
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 180 CATAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTCCGCTTCT 224
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 687 CATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCT 731
> AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5766733-5767830 FORWARD LENGTH=1098
Length=1098
Score = 63.9 bits (34), Expect = 2e-09
Identities = 47/53 (89%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 422 ATGGAATTTTCTTCATTGACGAGGAGAAGAAAATCGTCATTGGTTTT-GATAA 473
|||||||||||||||||||||||||||||||| | || | |||||| |||||
Sbjct 887 ATGGAATTTTCTTCATTGACGAGGAGAAGAAAGTAGTTGT-GGTTTTTGATAA 938
> AT3G03405.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:809875-810795 REVERSE LENGTH=582
Length=582
Score = 56.5 bits (30), Expect = 3e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 573 GTGCTCTTATGTTCCAAGTTTAGTGCAAATCAA 605
|||||||||||||||||||||||||||| ||||
Sbjct 471 GTGCTCTTATGTTCCAAGTTTAGTGCAACTCAA 503
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 572 TGTGCTCTTATGTTCCAAGTTTAGTGCA 599
||||||||||||||||||||||||||||
Sbjct 1103 TGTGCTCTTATGTTCCAAGTTTAGTGCA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5