BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930431 Length=397 Score E Sequences producing significant alignments: (Bits) Value AT3G23805.1 | Symbols: RALFL24 | ralf-like 24 | chr3:8586382-85... 617 2e-176 AT4G13950.1 | Symbols: RALFL31 | ralf-like 31 | chr4:8058072-80... 226 1e-58 > AT3G23805.1 | Symbols: RALFL24 | ralf-like 24 | chr3:8586382-8587056 FORWARD LENGTH=675 Length=675 Score = 617 bits (334), Expect = 2e-176 Identities = 371/388 (96%), Gaps = 5/388 (1%) Strand=Plus/Plus Query 3 AAATTTTCACACACCGACATGTCGAGATCCTTAGCTCTCGTTTACTTATCCATACTTT-T 61 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | Sbjct 68 AAATTTTCACACACCGACATGTCTAGATCCTTAGCTCTCGTTTACTTATCCTTACTTTGT 127 Query 62 ACTTCAAACCCATCTCTCAATCTCCGTCACGGTTCCGATTCCGTCGGTGAACGGAGAAAT 121 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 128 -CTTCAAACCCATCTCTCAATCTCCGTCACAGTTCCGATTCCGTCGGTAAACGGCGAAAT 186 Query 122 CGACGCAATGCTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCC 181 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 187 CGACGCAATGCTGAACCGGAACGGCGTAATCGGAGAGGAAGAAGGAGAGGAGATGATGCC 246 Query 182 GTCGGAGATAAGCCGGAGAGTAATGATGATGCGGAAACGA-TACATAAGCTATGAAACTT 240 ||||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 247 ATCGGAGATAAGTCGGAGAGTAATGATGATGCGGAAAC-AGTACATAAGCTACGAAACTT 305 Query 241 TAAGGAGAGACATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTG 300 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 TAAGGAGAGATATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTG 365 Query 301 GTCAGGCTAATGCTTACAACAGAGGATGTAGCGTCATTACTAGGTGTGCTAGAGACACTA 360 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 366 GTCAGGCTAATGCTTACAACAGAGGATGTAGTGTCATTACTAGGTGTGCTAGAGACACTA 425 Query 361 ACGACATCAAGACTTGAAA-CATTGGGG 387 ||||||||||||||||||| |||||||| Sbjct 426 ACGACATCAAGACTTGAAAACATTGGGG 453 > AT4G13950.1 | Symbols: RALFL31 | ralf-like 31 | chr4:8058072-8058675 REVERSE LENGTH=604 Length=604 Score = 226 bits (122), Expect = 1e-58 Identities = 248/308 (81%), Gaps = 11/308 (4%) Strand=Plus/Plus Query 75 CTCTCAATCTCCGTC-ACG-GTT-CCGATTCCGTCGGTGAACGGAGAAATCGACGCAATG 131 |||| |||||||| | | | ||| ||||||||||| |||||||| |||||||||||| Sbjct 109 CTCTTAATCTCCGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATG 168 Query 132 CTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCCGTCGGAGATA 191 ||| ||| ||| | | ||| || ||||| | || | || | ||||| | ||||| Sbjct 169 TTGATCCGAAACAGTATCATC--GG-AGAAG-ATGA-A-GATCTAATGCCAACTGAGATC 222 Query 192 AGCCGGAGAGTAATGATGATGCGGAAACGATACATAAGCTATGAAACTTTAAGGAGAGAC 251 |||||||||||| ||||| || |||||| ||||| |||| ||||| ||||||||||| Sbjct 223 AGCCGGAGAGTACTGATGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGAC 282 Query 252 ATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTGGTCAGGCTAAT 311 ||||||||||||||||||||||| |||||||| |||| |||||||||||| || |||||| Sbjct 283 ATGGTTCCTTGTCAGAAACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAAT 342 Query 312 GCTTACAACAGAGGATGT-AGCGTCATTACTAGGTGTGCTAGAGACACTAACGACATCAA 370 |||||| |||||| ||| | | |||||| || || ||||||||||| ||||||||||| Sbjct 343 TCTTACAGCAGAGGCTGTGA-CACCATTACCAGATGCGCTAGAGACACAAACGACATCAA 401 Query 371 GACTTGAA 378 || |||| Sbjct 402 CACATGAA 409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18749870377 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5