BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930431
Length=397
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23805.1 | Symbols: RALFL24 | ralf-like 24 | chr3:8586382-85... 617 2e-176
AT4G13950.1 | Symbols: RALFL31 | ralf-like 31 | chr4:8058072-80... 226 1e-58
> AT3G23805.1 | Symbols: RALFL24 | ralf-like 24 | chr3:8586382-8587056
FORWARD LENGTH=675
Length=675
Score = 617 bits (334), Expect = 2e-176
Identities = 371/388 (96%), Gaps = 5/388 (1%)
Strand=Plus/Plus
Query 3 AAATTTTCACACACCGACATGTCGAGATCCTTAGCTCTCGTTTACTTATCCATACTTT-T 61
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 68 AAATTTTCACACACCGACATGTCTAGATCCTTAGCTCTCGTTTACTTATCCTTACTTTGT 127
Query 62 ACTTCAAACCCATCTCTCAATCTCCGTCACGGTTCCGATTCCGTCGGTGAACGGAGAAAT 121
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 128 -CTTCAAACCCATCTCTCAATCTCCGTCACAGTTCCGATTCCGTCGGTAAACGGCGAAAT 186
Query 122 CGACGCAATGCTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCC 181
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 187 CGACGCAATGCTGAACCGGAACGGCGTAATCGGAGAGGAAGAAGGAGAGGAGATGATGCC 246
Query 182 GTCGGAGATAAGCCGGAGAGTAATGATGATGCGGAAACGA-TACATAAGCTATGAAACTT 240
||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 247 ATCGGAGATAAGTCGGAGAGTAATGATGATGCGGAAAC-AGTACATAAGCTACGAAACTT 305
Query 241 TAAGGAGAGACATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTG 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TAAGGAGAGATATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTG 365
Query 301 GTCAGGCTAATGCTTACAACAGAGGATGTAGCGTCATTACTAGGTGTGCTAGAGACACTA 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 366 GTCAGGCTAATGCTTACAACAGAGGATGTAGTGTCATTACTAGGTGTGCTAGAGACACTA 425
Query 361 ACGACATCAAGACTTGAAA-CATTGGGG 387
||||||||||||||||||| ||||||||
Sbjct 426 ACGACATCAAGACTTGAAAACATTGGGG 453
> AT4G13950.1 | Symbols: RALFL31 | ralf-like 31 | chr4:8058072-8058675
REVERSE LENGTH=604
Length=604
Score = 226 bits (122), Expect = 1e-58
Identities = 248/308 (81%), Gaps = 11/308 (4%)
Strand=Plus/Plus
Query 75 CTCTCAATCTCCGTC-ACG-GTT-CCGATTCCGTCGGTGAACGGAGAAATCGACGCAATG 131
|||| |||||||| | | | ||| ||||||||||| |||||||| ||||||||||||
Sbjct 109 CTCTTAATCTCCGCCGATGCGTTCCCGATTCCGTCTCCCAACGGAGAGATCGACGCAATG 168
Query 132 CTGAACCGGAACGGCGTAATCGGGGAAGAAGAAGGAGAGGAGATGATGCCGTCGGAGATA 191
||| ||| ||| | | ||| || ||||| | || | || | ||||| | |||||
Sbjct 169 TTGATCCGAAACAGTATCATC--GG-AGAAG-ATGA-A-GATCTAATGCCAACTGAGATC 222
Query 192 AGCCGGAGAGTAATGATGATGCGGAAACGATACATAAGCTATGAAACTTTAAGGAGAGAC 251
|||||||||||| ||||| || |||||| ||||| |||| ||||| |||||||||||
Sbjct 223 AGCCGGAGAGTACTGATGGCGCAGAAACGGTACATCGGCTACGAAACGCTAAGGAGAGAC 282
Query 252 ATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTGGTCAGGCTAAT 311
||||||||||||||||||||||| |||||||| |||| |||||||||||| || ||||||
Sbjct 283 ATGGTTCCTTGTCAGAAACCAGGAGCTTCTTACTACGATTGTCGCTCTGGACAAGCTAAT 342
Query 312 GCTTACAACAGAGGATGT-AGCGTCATTACTAGGTGTGCTAGAGACACTAACGACATCAA 370
|||||| |||||| ||| | | |||||| || || ||||||||||| |||||||||||
Sbjct 343 TCTTACAGCAGAGGCTGTGA-CACCATTACCAGATGCGCTAGAGACACAAACGACATCAA 401
Query 371 GACTTGAA 378
|| ||||
Sbjct 402 CACATGAA 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18749870377
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5