BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930434

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23900.1 | Symbols:  | RNA recognition motif (RRM)-containin...  89.8    9e-18


> AT3G23900.1 | Symbols:  | RNA recognition motif (RRM)-containing 
protein | chr3:8631606-8636045 REVERSE LENGTH=3417
Length=3417

 Score = 89.8 bits (48),  Expect = 9e-18
 Identities = 55/58 (95%), Gaps = 2/58 (3%)
 Strand=Plus/Minus

Query  113   ATCAGGTCTCAGTTTCCTACTTATCTCTCTGCAGCTCTAGCTGCTGCAAGCTCATTGG  170
             ||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||
Sbjct  1675  ATCAGGTCTCAGTTTCCTACTTATCTCT--GCAGCTCTAGCTGCTGCAAGCTCAGTGG  1620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9601140059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5