BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930442
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23870.1 | Symbols: | Protein of unknown function (DUF803) ... 1679 0.0
AT4G13800.1 | Symbols: | Protein of unknown function (DUF803) ... 952 0.0
> AT3G23870.1 | Symbols: | Protein of unknown function (DUF803)
| chr3:8619192-8621907 FORWARD LENGTH=1553
Length=1553
Score = 1679 bits (909), Expect = 0.0
Identities = 1011/1059 (95%), Gaps = 12/1059 (1%)
Strand=Plus/Plus
Query 1 AACAAATTATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AAC-AATTATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATT 432
Query 61 TTAGCAGTGTCTTCAAGTATTTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTAGCAGTGTCTTCAAGTATCTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTC 492
Query 121 AAGAAAGCCGGTGCAAGCGGTGTCCGAGCAGGTGAAGGAGGGTATGGATATTTAAAGGAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 493 AAGAAAGCCGGTGCAAGCGGTGTCCGAGCAGGTGAAGGAGGGTATGGATACTTGAAGGAG 552
Query 181 CCATGGTGGTGGGCTGGAATGATAACAATGATTGTTGGGGAAGTAGCTAATTTTGCAGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CCATGGTGGTGGGCTGGAATGATAACAATGATTGTTGGGGAAGTAGCTAATTTTGCAGCC 612
Query 241 TATGCATTTGCACCGGCTATTCTTG-TAACACCTTTGGGAGCTTTAAGTATCATATTCAG 299
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 613 TATGCATTTGCACCGGCTATT-TTGGTAACACCTTTGGGAGCTTTAAGTATTATATTCAG 671
Query 300 CGCAGTGCTCGCGCATTTTATTTTGCAAGAGAAACTGCATATGTTTGGGATACTCGGTTG 359
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 672 CGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTG 731
Query 360 CATTCTTTGTGTTGTTGGGTCTACAACTATAGTCTTACACGCCCCGCATGAACAGAAAAT 419
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 732 CATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACACGCACCACATGAACAGAAAAT 791
Query 420 TGAATCAGTCAAGCAAATATGGCAGCTTGCTATCGAACCAGGTTTCCTTGTGTATTCTGC 479
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 792 AGAATCAGTCAAGCAAATATGGCAGCTTGCTATTGAACCAGGTTTCCTTGTGTATTCTGC 851
Query 480 TGTGATTGTGGTTGTGGTGGCTATACTGATCTTCTACTATGAACCGCGTTACGGGAAGAC 539
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 852 TGTGATTGTGATTGTGGTGGCTATACTGATCTTCTACTATGAACCGCGCTACGGGAAGAC 911
Query 540 TCATATGATAGTATATGTCGGAATCTGTTCCTTAATGGGTTCTCTTACTGTTATGAGTGT 599
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 912 TCATATGATCGTATATGTCGGAATCTGCTCCTTAATGGGTTCTCTTACTGTTATGAGTGT 971
Query 600 CAAAGCTGTGGCGATTGCGATTAAACTGACATTTTCGGGGACGAATCAGTTCAAATACTT 659
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 972 CAAAGCTGTGGCGATTGCGATTAAACTGACATTTTCAGGGACGAATCAGTTTAAATACTT 1031
Query 660 CAACACTTGGATTTTCATTTTAGTAGTTGCAACTTGTTGCCTTTTGCAAATCAACTACTT 719
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1032 CAACACTTGGATTTTCATTTTAGTAGTTGCAACTTGTTGCATTTTGCAGATCAACTACTT 1091
Query 720 GAACAAGGCGTTGGATACATTCAATACAGCTGTTATTTCTCCGGTTTACTACGTTATGTT 779
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1092 GAACAAGGCATTGGATACATTCAACACAGCGGTTATTTCTCCGGTTTACTACGTTATGTT 1151
Query 780 CACAACTTTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAGTGG 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CACAACATTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAGTGG 1211
Query 840 ATTGAAGATTGCAACACAGTTGTGTGGGTTTGTGACGATTTTGTCAGGAACATTTCTGCT 899
||| |||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1212 ATTAAAGATTGCAACAGAGTTGTGTGGTTTTGTGACGATTTTATCAGGAACTTTTCTGCT 1271
Query 900 TCACAAGACCAAAGATATGGGAAACAGCGTAGGTGGAAGTGGTCGTGGTTCTGTCTCAAT 959
||||||||||||||||||||||||||| | | |||||||||||||||| |||||||
Sbjct 1272 TCACAAGACCAAAGATATGGGAAACAG--T-GC---AAGTGGTCGTGGTTCTATCTCAAT 1325
Query 960 GCCTACTAGAGACACTCCTGTCTTCACTAATTCAGGATCTGGTCGGAGCTCCAGCTCTGA 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1326 GCCTACTAGAGACACTCCTGTCTTCACTAATTCAGGATCCGGTCGGAGCTCCAGCTCTGA 1385
Query 1020 TAAAGTAGCTTCCTGAT---CTAACGGCCCAAATTACTT 1055
||||||||||||||||| |||||||| || ||| |||
Sbjct 1386 TAAAGTAGCTTCCTGATGATCTAACGGCTCAGATTCCTT 1424
> AT4G13800.1 | Symbols: | Protein of unknown function (DUF803)
| chr4:8001862-8004139 REVERSE LENGTH=1559
Length=1559
Score = 952 bits (515), Expect = 0.0
Identities = 798/932 (86%), Gaps = 29/932 (3%)
Strand=Plus/Plus
Query 9 ATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATTTTAGCAGT 68
|||| |||| |||||||| | |||||||||||||| ||| |||||||||||||||| ||
Sbjct 270 ATAT-TAGCAAAGATGGAGGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGT 328
Query 69 GTCTTCAAGTATTTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTCAAGAAAGC 128
|||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 329 GTCTTCGAGTATATTCATCGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGC 388
Query 129 CGGTGCAAGCGGTGTCC-GAGCAGGTGAAGGAGGGTATGGATATTTAAAGGAACCATGGT 187
||||| ||||| | || |||||||||||||||| |||||||| ||| | ||||| ||||
Sbjct 389 CGGTGTTAGCGGCG-CCAGAGCAGGTGAAGGAGGATATGGATACTTATATGAACCTTGGT 447
Query 188 GGTGGGCTGGAATGATAACAATGATTGTTGGGGA-AGTAGCTAATTTTGCAGCCTATGCA 246
|||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||
Sbjct 448 GGTGGGCTGGAATGATAACAATGATTGTTGGGGAGA-TAGCCAATTTTGCAGCATATGCA 506
Query 247 TTTGCACCGGCTATTCTTGTAACACCTTTGGGAGCTTTAAGTATCATATTCAGCGCAGTG 306
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 507 TTTGCACCGGCTATTCTAGTAACACCTTTGGGAGCTTTAAGTATTATTTTCAGCGCAGTG 566
Query 307 CTCGCGCATTTTATTTTGCAAGAGAAACTGCATATGTTTGGGATACTCGGTTGCATTCTT 366
|| || |||||||||||| ||||||| ||||||||||||| ||||| ||||| | ||
Sbjct 567 CTAGCACATTTTATTTTGGAAGAGAAGTTGCATATGTTTGGTATACTTGGTTGTGTCCTC 626
Query 367 TGTGTTGTTGGGTCTACAACTATAGTCTTACACGCCCCGCATGAACA-GAAAATTGAATC 425
||||||||||| |||||||| || || ||||| || || || || || | | |||||||
Sbjct 627 TGTGTTGTTGGATCTACAACGATTGTTTTACATGCTCCTCACGAGCAAGGCA-TTGAATC 685
Query 426 AGTCAAGCAAATATGGCAGCTTGCTATCGAACCAGGTTTCCTTGTGTATTCTGCTGTGAT 485
||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |
Sbjct 686 CGTCAAGCAAGTATGGCACCTTGCTACCGAACCAGGTTTCCTTGCATATTCTGCTGTGGT 745
Query 486 -TGTGGTTGTGGTGGCTATAC-T-GATCTTCTACTATGAACCGCGTTACGGGAAGACTCA 542
| ||||||||||| || | | | |||||| |||||||| |||||||| |||||||| ||
Sbjct 746 CT-TGGTTGTGGTG-CT-TGCATTGATCTTTTACTATGAGCCGCGTTATGGGAAGACGCA 802
Query 543 TATGATAGTATATGTCGGAATCTGTTC-CTTAATGGGTTCTCTTACTGTTATGAGTGTCA 601
||||||||||||||| || || || || || |||||| |||||||| ||||||||||| |
Sbjct 803 TATGATAGTATATGTTGGGATTTGCTCTCT-AATGGGCTCTCTTACAGTTATGAGTGTTA 861
Query 602 AAGCTGTGGCGATTGCGATTAAA-CTGACATTTTCGGGGACGAATCAGTTCAAATACTTC 660
||||||||||||| || || ||| ||||| ||||| |||| ||| || ||||| ||||||
Sbjct 862 AAGCTGTGGCGATCGCCAT-AAAGCTGACTTTTTCCGGGATGAACCAATTCAAGTACTTC 920
Query 661 AACACTTGGATTTTCATTTTAGTAGTTG-CAACT-TGTTGCCTTTTGCAAATCAACTACT 718
|| | ||||| ||||| ||||||| | | | | |||||| ||||||||||||||||||
Sbjct 921 CACGCATGGATCTTCATCATAGTAGT-GACCA-TATGTTGCATTTTGCAAATCAACTACT 978
Query 719 TGAACAAGGCGT-TGGATACATT-CAATACAGCTGTTATTTCTCCGGTTTACTACGTTAT 776
|||||||||| | |||||| ||| ||| ||||| || || ||||| || ||||| |||||
Sbjct 979 TGAACAAGGC-TCTGGATA-ATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTAT 1036
Query 777 GTTCACAACTTTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAG 836
||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1037 GTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAAAG 1096
Query 837 TGGATTG-AAGATTGCAACAC-AGTTGTGTGGGTTTGTGACGATTTTGTCAGGAACATTT 894
||||||| || ||||| || | || | ||||| |||||||| |||||||||||||| |||
Sbjct 1097 TGGATTGCAA-ATTGCTAC-CGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACTTTT 1154
Query 895 CTGCTTCACAAGACCAAAGATATGGGAAACAG 926
|| || |||||||| ||||| |||||||||||
Sbjct 1155 CTTCTCCACAAGACAAAAGACATGGGAAACAG 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51741171410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5