BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930444
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21481.1 | Symbols: | Pseudogene of AT4G34870; ROC5 (ROTAMA... 204 1e-51
> AT3G21481.1 | Symbols: | Pseudogene of AT4G34870; ROC5 (ROTAMASE
CYP 5); peptidyl-prolyl cis-trans isomerase | chr3:7572232-7572483
REVERSE LENGTH=252
Length=252
Score = 204 bits (110), Expect = 1e-51
Identities = 174/204 (85%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 277 TGGTCGGATCGTGATAGAGCTCTTTGCCCACACGACCCCACGGA-CGGCGGAGAACTTCC 335
||||||||| ||||| ||||||||||| ||||||| |||| || |||||||||| ||||
Sbjct 47 TGGTCGGATTGTGATGGAGCTCTTTGCAGACACGACACCAC-GAGCGGCGGAGAATTTCC 105
Query 336 GAGCCCTCTGT--ACTGGCGAGAAAGGCATGGGGAA-ATGTGGTAAGCCACTCCACTACA 392
| ||||| ||| || || |||||||| |||||||| | ||||||||||||||||||||
Sbjct 106 GGGCCCTATGTACACAGG-GAGAAAGGGATGGGGAAGCT-TGGTAAGCCACTCCACTACA 163
Query 393 AGGGATCAATCATCCACCGTCTGGTTCCCGATCAAATGTTATGTGGAGGAGATATCACTG 452
||||||||||| |||||||||| | || |||||||||| |||||||||||| ||||||
Sbjct 164 AGGGATCAATCTTCCACCGTCTTGAACCTAATCAAATGTTCTGTGGAGGAGATTTCACTG 223
Query 453 CTGGTGACGGATCCGGAGGGGAAT 476
||||||| ||| |||||| ||||
Sbjct 224 CTGGTGATGGAAGCGGAGGCGAAT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5