BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930446
Length=2998
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containin... 4911 0.0
AT3G23910.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 172 1e-41
AT3G24255.1 | Symbols: | RNA-directed DNA polymerase (reverse ... 172 1e-41
> AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:8631606-8636045 REVERSE LENGTH=3417
Length=3417
Score = 4911 bits (2659), Expect = 0.0
Identities = 2890/3002 (96%), Gaps = 14/3002 (0%)
Strand=Plus/Plus
Query 4 GGTACTTTATTGTT-TCAATGGCTTCAGATCGTGGTTCT---GCTGCTGCTGGTAAGCCC 59
|||||||||| ||| | |||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 177 GGTACTTTATAGTTGT-AATGGCTTCAGATCGTGGTTCTGCAGCTTCTGGTGGTAAGCCC 235
Query 60 TTTTGGATGAAACATGCGGAAGATGCAAAAATCAAAGACGAAGGAGAGAAAGACGCTGCG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATTTGGATGAAACATGCGGAAGATGCAAAAATCAAAGACGAAGGAGAGAAAGACGCTGCG 295
Query 120 GCTAAAGCAGCTTTTGAAGCTACATTCAAAGGTGTAGACCAAACTACACATTTGATTGAA 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GCAAAAGCAGCTTTTGAAGCTACATTCAAAGGTGTAGACCAAACTACACATTTGATTGAA 355
Query 180 GCTGTTGCACCGGCACCGGAATCTGCACCGGAATCTGATAGTGATTC---tgatgatgat 236
|||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 356 CCTGTTGCACCGGTACCGGAATCCGCACCGGAATCTGATAGTGATTCAGATGATGATGAT 415
Query 237 gatgatgaATCTGATTACTTGTCTAGGAAACCAATTGGTCCTGTGGATCCGAGTAAGTCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GATGATGAATCTGATTACTTGTCTAGGAAACCAATTGGTCCTGTGGATCCGAGTAAGTCT 475
Query 297 ACAGCTTCTGGTGCTGGTATTGGTGGTGGAACGGCTTGTGTTCCGTCTACTTTTGTTGTT 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 476 ACAGCTTCTGGTGCTGGTATTGGTGGTGGAACGGCTTGTGTTCCGTCTACGTTTGTTGTT 535
Query 357 GTAACTAAGGATTCTGATGGGAGGAAAGTTCCTAATGGTGGAGCTTTGATTAGAGTTAGA 416
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 536 GTAACTAAGGATTCTGATGGGAGGAAAGTTCCAAATGGTGGAGCTTTGATTAGAGTTAAA 595
Query 417 GTGTGTCCTGGTGTTGGTGTTGGTGGTACTGATCAAGAAGGTGTTGTTAAAGATGTTGGT 476
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 596 GTGTCTCCTGGTGTTGGTGTTGGTGGTACTGATCAAGAAGGTGTGGTTAAAGATGTTGGT 655
Query 477 GATGGGAGTTATGCTGTTACTTATGTTGTGCCTAAGAGAGGAAACTATATGGTTAATATT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GATGGGAGTTATGCTGTTACTTATGTTGTGCCTAAGAGAGGAAACTATATGGTTAATATT 715
Query 537 GAATGCAATGGGAGTGCTATCATGGGAAGTCCCTTTCCTGTCTTCTTTAGCCAAGGGTCT 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAATGCAATGGGAATGCTATCATGGGAAGTCCCTTTCCTGTCTTCTTTAGCCAAGGGTCT 775
Query 597 TCTTCGACTGGATTGATGGGTTCTGCTCCAGCTTCATACTCGAATCTTATAAATCAAACC 656
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCTTCTACTGGACTGATGGGTTCTGCTCCAGCTTCATACTCGAATCTTATAAATCAAACA 835
Query 657 ATGCCAAACATGCCTAATTACACTGGTTCTGTTTCGGGTGCTTTCCCGGGGCTGTTGGGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 ATGCCAAACATGCCTAATTACACTGGTTCTGTTTCGGGTGCTTTCCCGGGGTTGTTGGGG 895
Query 717 ATGGTTCCAGGCATTGCATCTGGTCCTTCAGGTGGTGCTATTTTGCCTGGAGTTGGAGCT 776
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATGGTTCCAGGGATTGCATCTGGTCCTTCAGGTGGTGCTATTTTGCCTGGAGTTGGAGCT 955
Query 777 TCGCTTGGGGAAGTCTGTCGGGAATATCTTAATGGTAGATGTGTGAACTCTATGTGCAAG 836
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCACTTGGGGAAGTTTGTCGAGAATATCTTAATGGTAGATGTGTGAACTCTATGTGCAAG 1015
Query 837 TTAAACCACCCTCCTCAGAATCTGCTGATGACTGCTATAGCTGCAACGACAAGTATGGGT 896
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTAAACCACCCTCCTCAGAATTTGCTGATGACTGCTATAGCTGCAACGACAAGTATGGGT 1075
Query 897 AATATGAGTCAGGTGCCTATGGCACCTTCTGCTGCAGCAATGGCTGCTGCACAGGCCATT 956
|| | ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 1076 AACCTTAGTCAGGTGCCTATGGCTCCTTCTGCTGCTGCAATGGCTGCTGCGCAGGCTATT 1135
Query 957 GTTGCCGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAAC 1016
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAAC 1195
Query 1017 AAGGGATCTTTAGGTTCCCCAGAAAAAGGAGATAACGGGGATTCATTGAAGAAATTTCTC 1076
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1196 AAGGGATCTTTAGGTTCCCCAGAAAAAGGAGAAAACGGGGA-T--TTGAAGAAATTTCTC 1252
Query 1077 CAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAGCTTC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAGCTTC 1312
Query 1137 TGTGGCACAGTAGTTGACTGTAGTATAACTGATTCAAAGCATCTTGCCTACATAGAATAC 1196
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1313 TGTGGCACAGTAGTTGACTGTAGTATAACTGATTCAAAGCATATCGCCTACATAGAATAC 1372
Query 1197 TCGAATTCCGAAGAAGCAACAGCTGCTTTGGCATTAAACAATACGGAAGTCTTTGGTAGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCGAATTCCGAAGAAGCAACAGCTGCTTTGGCATTAAACAATACGGAAGTCTTTGGTAGA 1432
Query 1257 CCATTGAATGTTGAGATTGCAAAATCGCTACCTCACAAACCATCTTCAAATAATTCTTCG 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GCATTGAATGTTGAGATTGCAAAATCGCTACCTCACAAACCATCTTCAAATAATTCTTCG 1492
Query 1317 TCCTCACTACCACTGATGATGCAACAGGCCGTCGCGATGCAGCAGATGCAATTCCAACAG 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1493 TCCTCACTACCACTGATGATGCAACAGGCCGTCGCGATGCAGCAGATGCAATTCCAGCAG 1552
Query 1377 GCTATACTAATGCAACAAGCCGTGGCTACTCAGCAGGCAGCAAATAGAGCTGCCACAATG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GCTATACTAATGCAACAAGCCGTGGCTACTCAGCAGGCAGCAAATAGAGCTGCCACAATG 1612
Query 1437 AAGTCTGCCACTGAGCTTGCAGCAGCTAGAGCTGCAGAGATAAGTAGGAAACTGAGACCT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 AAGTCTGCCACTGAGCTTGCAGCAGCTAGAGCTGCAGAGATAAGTAGGAAACTGAGACCT 1672
Query 1497 GATGGAGTTGGAAATGATGAAAAAGAAGCTGATCAGAAGTCTAGGTCACCATCTAAGTCT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GATGGAGTTGGAAATGATGAAAAAGAAGCTGATCAGAAGTCTAGGTCACCATCTAAGTCT 1732
Query 1557 CCTG---GGTCGAGATCAAAGTCAAAATCACCAATAAGTTACAGGCGCAGACGGAGATCT 1613
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1733 CCTGCAAGGTCGAGATCAAAGTCAAAATCACCAATAAGTTACAGGCGAAGACGGAGATCT 1792
Query 1614 CCATCCTATTCACCACCGTTTCGTCGCCCAAGAAATCATAGATCGAGATCACCATTAAGA 1673
||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1793 CCAACCTATTCACCACCGTTTCGTCGCCCAAGAAGTCACAGATCGAGATCACCATTAAGA 1852
Query 1674 TATCACCGGCGATCAACTTATGAAGGGAGAAGGCGGTCATATAGAGATTCTAGGGATATT 1733
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 TATCAACGGCGATCAACTTATGAAGGGAGAAGGCGGTCATATAGAGATTCTAGGGATATT 1912
Query 1734 TCTGAAAGTAGGAGATACGGTAGATCAGATGAACACTATTCTTCCAGTTCAAGGAGAAGT 1793
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1913 TCTGAAAGTAGGAGATACGGTAGATCAGATGAACACCATTCTTCTAGTTCAAGGAGAAGT 1972
Query 1794 AGGAGTGTAAGCCCTAAAAAGAGAAAATCTGGACAAGAAGATTCAGAGCTCTCAAGACAT 1853
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1973 AGGAGTGTAAGCCCTAAAAAGAGAAAATCTGGACAAGAAGATTCAGAGCTGTCAAGACTT 2032
Query 1854 CGACGTGATAGCTCATCACGTGGAGAGAAGAAATCATCTCGTGCTGGTTCACGATCACCG 1913
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 CGACGAGATAGCTCATCACGTGGAGAGAAGAAATCATCTCGTGCTGGTTCACGATCACCA 2092
Query 1914 AGGCGACGTAAGGAAGTTAAGTCAACCCCAAGAGATGATGAGGAAAACAAAGTGAAACGG 1973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 AGGCGACGTAAGGAAGTTAAGTCAACCCCAAGAGATGATGAGGAAAACAAAGTGAAACGT 2152
Query 1974 AGAACACGTTCAAGATCTAGATCAGTGGAAGATTCTGCAGATATAAAGGATAAAGCTAGA 2033
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2153 AGAACACGTTCAAGATCTAGATCAGTGGAAGATTCTGCAGATATAAAGGATAAATCTAGA 2212
Query 2034 GATGAGGAATTGAAACATCACAAAAAGCGGTCAAGGTCAAGATCTCGTGAAGATAGGAGT 2093
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2213 GATGAGGAATTGAAACATCACAAAAAGCGGTCGAGGTCAAGATCTCGTGAAGATAGGAGT 2272
Query 2094 AAAACCAGAGACACATCTCGAAATTCTGATGAAACTAAACAGAAACACAGGGGGAGGTCT 2153
||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 2273 AAAACCAGAGACACATCTCGAAATTCTGATGAAGCTAAACAGAAACACCGGCAGAGGTCT 2332
Query 2154 AGGTCCAAATCATTAGAAAACGACAATGGTTCTGATGAGAATGTTGATGTTGCTCAAGAT 2213
||||||| |||||| ||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 2333 AGGTCCAGATCATTGGAAAATGACAATGGATCTCATGAGAATGTTGATGTTGCTCAAGAC 2392
Query 2214 GGTGACCTGAATTCTCGTCACAGTAGGCGCAGGTCAAAATCATTGGACGAGGACTATGAT 2273
||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2393 AATGATCTAAATTCCCGTCACAGTAAGCGCAGGTCAAAATCATTGGACGAGGACTATGAT 2452
Query 2274 ATGAAAGAGAGGAGGGGAAGGTCCAGGTCTAGATCATTGGAAACGAAAAAGAGGTCTTTT 2333
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 2453 ATGAAAGAGAGGAGGGGAAGGTCCAGGTCCAGATCATTGGAAACGAAAAACAGGTCTTCT 2512
Query 2334 GGGAAAAATAAGCTGGATGAAGACAGAAACACAGGATCACGTCGAAGGAGGTCCAGGTCA 2393
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 AGGAAGAATAAGCTGGATGAAGACAGAAACACAGGATCACGTCGAAGGAGGTCCAGGTCA 2572
Query 2394 AAATCAGTGGAAGGTAAGCGTAATTATAACAAGGAGACTCGGAGCAGGGACAAAAAGTCC 2453
|||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 2573 AAATCAGTGGAAGGTAAGCGCAGTTATAACAAGGAGACTCGAAGCAGGGACAAAAAGTCC 2632
Query 2454 AAGCGTCGTAGTGGAAGACGGTCAAGGTCACCATCATCTGAGGGTAAGCAAGGGAGAGAT 2513
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2633 AAGCGTCGTAGTGGAAGACGGTCGAGGTCACCATCATCTGAGGGTAAGCAAGGGAGAGAT 2692
Query 2514 ATCAGGTCATCCCCTGGATATTCTGATGaaaaaaaaTCAAGACATAAGCGGCACTCCAGG 2573
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2693 ATCAGGTCATCCCCTGGATATTCTGATGAAAAGAAATCAAGACATAAACGGCACTCCAGG 2752
Query 2574 TCAAGATCAACAGAGAAAAAGAACAGTTCAAGAGAAAAAAGGTCAAAACGTCATGAAAGA 2633
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2753 TCAAGATCAATAGAGAAAAAGAACAGTTCAAGAGATAAAAGGTCAAAACGTCATGAAAGA 2812
Query 2634 TTGCGGTCATCATCTCCTCTAGGCGACAAAAGACGGGGCGATAGATCATTATCTCCTGTT 2693
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 2813 TTGCGGTCATCATCTCCTGGACGTGACAAAAGACGGGGCGATAGATCATTATCTCCTGTT 2872
Query 2694 AGTTCAGAAGATCATAAGATCAAGAAAAGACACTCTGGATCAAAATCTGTGAAAGAGAAA 2753
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2873 AGTTCAGAGGATCATAAGATCAAGAAAAGACACTCTGGATCAAAATCTGTGAAAGAGAAA 2932
Query 2754 CCCCGCTCAGATTATGAGAAAGTTGACTATGCAGATGCAAAATCAGATTCTAGTCGGCCG 2813
|||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||| || |
Sbjct 2933 CCCCACTCAGATTATGAGAAAGTTGACGATGGAGATGCAAATTCAGATTCTAGTCAGCAG 2992
Query 2814 GAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTCATCACAGGATGTGGAG 2873
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 2993 GAAAGGAATCTTGAAGGTCATTTATTGTCATTGGATTCGATGTCATCACAGGATGTGGAG 3052
Query 2874 AAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATATAGGTGATGCAAATGATGAT 2933
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 3053 AAGTCAAAAGAGAATCCACCATCTAGCAGCTCAGTGGAAAGAGGTGATGCAAATGATGAT 3112
Query 2934 GAGAAGTTTAAGATTGAGGAGAAAAGGATTATTCTCAAGTCATAGGAAGATCTGGATTCT 2993
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 3113 GAGAAGTTTAAGATTGAGGAGAAAAGGATTATTCTTAAGTCATAGGAACATCTGGATTCT 3172
Query 2994 AT 2995
||
Sbjct 3173 AT 3174
> AT3G23910.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNA-directed DNA polymerase (reverse transcriptase)-related
family protein (TAIR:AT3G24255.2); Has 562 Blast hits
to 532 proteins in 147 species: Archae - 28; Bacteria - 51;
Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other
Eukaryotes - 153 (source: NCBI BLink). | chr3:8636427-8639442
REVERSE LENGTH=1531
Length=1531
Score = 172 bits (93), Expect = 1e-41
Identities = 132/151 (87%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 2798 AGATTCTAGTCGGCCGGAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTC 2857
|||||||||| || | ||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 425 AGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTC 484
Query 2858 ATCACAGGATGTGGAGAAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATA-TAG 2916
||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 485 ATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGA-AGTAT 543
Query 2917 GTGATGCAAATGATGATGAGAAGTTTAAGAT 2947
|||| | | ||||||||| |||||||||||
Sbjct 544 GTGAAGTGATTGATGATGACAAGTTTAAGAT 574
> AT3G24255.1 | Symbols: | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | chr3:8788854-8793368
FORWARD LENGTH=2777
Length=2777
Score = 172 bits (93), Expect = 1e-41
Identities = 132/151 (87%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 2798 AGATTCTAGTCGGCCGGAAAGGAATCTTGAAGGTCTTTTATTGTCACTGGATTCGATGTC 2857
|||||||||| || | ||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 1678 AGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTC 1737
Query 2858 ATCACAGGATGTGGAGAAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAGTGGATA-TAG 2916
||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 1738 ATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGA-AGTAT 1796
Query 2917 GTGATGCAAATGATGATGAGAAGTTTAAGAT 2947
|||| | | ||||||||| |||||||||||
Sbjct 1797 GTGAAGTGATTGATGATGACAAGTTTAAGAT 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149045987653
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5