BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930448
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24260.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 931 0.0
AT3G28870.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone d... 383 2e-105
> AT3G24260.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; CONTAINS InterPro DOMAIN/s: Histone deacetylase
interacting (InterPro:IPR013194); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G28870.1); Has 220
Blast hits to 218 proteins in 65 species: Archae - 7; Bacteria
- 6; Metazoa - 43; Fungi - 2; Plants - 115; Viruses -
0; Other Eukaryotes - 47 (source: NCBI BLink). | chr3:8793837-8794961
REVERSE LENGTH=1125
Length=1125
Score = 931 bits (504), Expect = 0.0
Identities = 890/1070 (83%), Gaps = 51/1070 (5%)
Strand=Plus/Plus
Query 124 TACTCGGAAAGACAGAACTAACTAGAGATCTTACGAGG-TTAAAAGAAAATCTTCTTGCT 182
||||| |||| | ||||| |||||||| |||| |||| || ||||| ||| ||| |
Sbjct 89 TACTCAGAAATCCCGAACTCACTAGAGAACTTAGGAGGCTT-AAAGACAATAACCTTAAT 147
Query 183 CGAAAGATTGA-C--GATGAGAAGCCGAAAGAAAACCCTA---TTCTTAATGATCCAAAG 236
||||||||||| | |||||||||||| |||| ||||||| |||||||||| ||||||
Sbjct 148 CGAAAGATTGATCATGATGAGAAGCCGGAAGAGAACCCTATTCTTCTTAATGAACCAAAG 207
Query 237 GTTAGACCCCGTATAAAGATTAGGTTTAAACTGATTGATAACCCTAAAGAAGATGTGGAG 296
| | ||| |||||| || || | || | | | | || |||||||| |||||||||
Sbjct 208 ATGATACCTCGTATACGGA-TA-G-TT----T-A-T-A-AA-CCTAAAGACGATGTGGAG 255
Query 297 AGAAAGAAGAAAAG-CCACTTAGAAGCGAAACAGAAGTTGACTGAGTTATTGATGGCTAC 355
||||||| | || | || ||||||||||||||||||||||| |||||||||| |||||
Sbjct 256 AGAAAGATG-AAGGACCGTTTAGAAGCGAAACAGAAGTTGACAGAGTTATTGAAGGCTAT 314
Query 356 CGAGAAGAAACTAACTCGGTCGGAATTGAGAGTTTACACTAACTTGTGTAAAGACTTTAG 415
|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 315 CGAGGAGAGACTAACTCGGTCGGAATTGAGAGTTTACACTTGCTTGTGTAAAGACTTTAA 374
Query 416 GTCTCATAAAATCGCTTATAGCGAATTCGTTACGTCTCTTCTACGTTTGGTCGAGAAATA 475
|||||||| ||||| ||| ||| ||||||||| |||||||| ||||||| |||| |||||
Sbjct 375 GTCTCATAGAATCGATTACAGCCAATTCGTTAAGTCTCTTCAACGTTTGATCGATAAATA 434
Query 476 CAAGAATCTTTATCAACGGTTCGTGGAAATTCCCTACGGTGATAAAGAAGATGAGGCTGG 535
|||||||||||||||||||||||| || ||| |||||||| || |||||||||||||||
Sbjct 435 CAAGAATCTTTATCAACGGTTCGTAGACATTGCCTACGGTCATGGAGAAGATGAGGCTGG 494
Query 536 AGAAACCCTAACTAGGGTTAAAGTAGATGAGAACCCGCAAGAAACAGAGTTGGATAAGAT 595
| | | || |||||||||| ||||| ||||| ||||| ||||||| |||||||||
Sbjct 495 A-A--C--TA----GGGTTAAAGTTGATGATAACCCCCAAGACACAGAGTCGGATAAGAT 545
Query 596 CAATTTGGAGGGAAAGAGGAAGAGAGGAATGTTGCTTCCACATGAATC-GAACCAACCTG 654
||| |||||||||||| |||||||||||||||||| |||| | ||||| || ||||||||
Sbjct 546 CAAGTTGGAGGGAAAGGGGAAGAGAGGAATGTTGCCTCCAAAGGAATCAGA-CCAACCTG 604
Query 655 AGAGACCTATGAAGAAAAGGAGAACGTCTGAACT-GTTGACACCTAACTATAGGCTTATC 713
|||||||| ||||||||||||||| | |||||| | |||||||||||||| ||| ||
Sbjct 605 AGAGACCTCTGAAGAAAAGGAGAAAGACTGAACGAGC-GACACCTAACTATAAGCTAATT 663
Query 714 CCCAAGGCAA-AACAGAGACCGGTCTCATCTTCGGTACTAAACAACACTTGTGCTGTGAA 772
||||||| || |||||| ||||||||| ||| | ||||||||||||||||| | ||||||
Sbjct 664 CCCAAGG-AAGAACAGACACCGGTCTCGTCTACAGTACTAAACAACACTTGGGTTGTGAA 722
Query 773 GAGATATAATTTCCAGGGAT-GTAAGAATCTAACCGATATCGAAGAAGATAGGTACAAAT 831
|| ||| || |||||| | | ||||| ||||||||||||||| |||||| |||||| |
Sbjct 723 CAGTTATGATATCCAGGCACAG-AAGAACCTAACCGATATCGAAAAAGATATGTACAACT 781
Query 832 GCGAAGATCAGATGTTCGAGGC-AGATGTGTTAATGGGAGTTCTAAGAACTGCAGTGGAG 890
| |||||||||||||||||| | |||| |||| ||||| |||||| || ||||| | ||
Sbjct 782 GGGAAGATCAGATGTTCGAG-CTAGATATGTTGGTGGGATTTCTAACAAGTGCAGCGAAG 840
Query 891 AATGCGGAGGAAGTAATTAGGGGAGATATGGTAT-TGGAAGATCTTGGAGAAAAGTTCTA 949
||||| |||||||| |||| ||||| | || | || |||||||||||| ||||||||
Sbjct 841 AATGCAGAGGAAGTTATTAACGGAGAGAGGG-ACCTGAAAGATCTTGGAGGGAAGTTCTA 899
Query 950 CAGATGTGTGGAAA-TGATGTATGGTGGAGATATG-TATGAAATAGTGACAGAAAATCAC 1007
|||||||| |||| | | |||||| |||||||| | ||||||||||| |||||||||
Sbjct 900 CAGATGTGCAGAAAATT-TATATGGTAGAGATATGCT-TGAAATAGTGAAAGAAAATCAT 957
Query 1008 CAAAGAGCTTTCCCTGTGATCTTAAACCGGTTGAATCAGAAACTGCGTGAGGTCACGGCT 1067
||||||| ||| |||| |||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 958 CAAAGAGTTTTACCTGCGATCTTGAACCGGTTGAATCAGAAACTGCGCGAGGTCACT-CT 1016
Query 1068 C-TAAGAGAAAGCTTGAAACCTGTCTGGAAGCAAACTATTGAAAAACTTTCTAAAAAGCA 1126
|||||||||| ||||||||||||| ||||||||| |||||||||||||||| || |||
Sbjct 1017 TGTAAGAGAAAGATTGAAACCTGTCTTGAAGCAAACGATTGAAAAACTTTCTACAAGGCA 1076
Query 1127 AAGTGAGT-CCATTGCACAAGACTGTGAAGTGAAGAAAACAAAAATCTGA 1175
||| | || ||| ||||||||| | | ||||||||| || || |||||||
Sbjct 1077 AAGAG-GTTCCACTGCACAAGAATCTCAAGTGAAGACAAGAACAATCTGA 1125
> AT3G28870.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylase interacting (InterPro:IPR013194), Sec63 domain
(InterPro:IPR004179); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G24260.1); Has 531 Blast hits
to 527 proteins in 118 species: Archae - 0; Bacteria - 10;
Metazoa - 251; Fungi - 29; Plants - 170; Viruses - 0; Other
Eukaryotes - 71 (source: NCBI BLink). | chr3:10890355-10891839
FORWARD LENGTH=1068
Length=1068
Score = 383 bits (207), Expect = 2e-105
Identities = 342/405 (84%), Gaps = 18/405 (4%)
Strand=Plus/Plus
Query 794 TAAGAATCTAACCGATATCGAAGAAGATAGGTACAAATGCGAAGATCAGATGTTCGAGGC 853
|||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 426 TAAGAACCTAACCGATATCGAAGAAGATATGTACAAATGGGAAGATGAGATGTTCGAGGT 485
Query 854 AGATGTGTTAATGGGAGTTCTAAGAACTGCAGTGGAGAATGCGGAGGAAGTAATTAGGGG 913
|||| |||| ||| ||||||||| || ||||||||||| ||| ||||||| |||| |||
Sbjct 486 AGATATGTTGATGAGAGTTCTAACAAGTGCAGTGGAGAGTGCAAAGGAAGTTATTAAGGG 545
Query 914 AGATATGGTA-TTGGAAGATCTTGGAGAAAAGTTCTACAGATGTGTGGAAATGATGTATG 972
||| |||| | || |||||||||||| |||||||||||||||||| || ||| | ||||
Sbjct 546 AGAGATGG-AGCTGAAAGATCTTGGAGCAAAGTTCTACAGATGTGTAGAGATGTTATATG 604
Query 973 GTGGAGATATGTATGAAATAGTGACAGAAAATCACCAAAGAGCTTTCCCTGTGATCTTAA 1032
||| |||||||| ||||| |||||||||| |||| ||||||||||| ||| ||||||| |
Sbjct 605 GTGAAGATATGTTTGAAACAGTGACAGAAGATCATCAAAGAGCTTTACCTATGATCTTGA 664
Query 1033 ACCGGTTGAATCAGAAACTGCGTGAGGTCACGGCT-CTAAGAGAAAGCTTGAAACCTGTC 1091
||||||||| |||||||||||| | |||||| || | ||||||||| ||||||||| ||
Sbjct 665 GCCGGTTGAAACAGAAACTGCGTCATGTCACGACTGC-AAGAGAAAGATTGAAACCTCTC 723
Query 1092 TGGAAGCAAACTATTGAAAAACTTTCTAAAAAGCAAAGTGAGTCCATTGCACAAGACTGT 1151
|||||||||||||||||||||||||||| ||| ||||| | || | | |||| ||
Sbjct 724 TGGAAGCAAACTATTGAAAAACTTTCTACAAATCAAAGAG-GTTC-T---ACAAT-CTC- 776
Query 1152 GAAGTGAAGAAAACAAAAATCTGAATCTGGTTTTAGAATGTAATT 1196
||||||||| ||||| | ||||||||||||||||||||||
Sbjct 777 -AAGTGAAGACAACAA----C--AATCTGGTTTTAGAATGTAATT 814
Score = 233 bits (126), Expect = 2e-60
Identities = 318/405 (79%), Gaps = 35/405 (9%)
Strand=Plus/Plus
Query 21 ATGGCGGACGCTGAT-ACGCTGATAAAGATGATGGGTATGAAGACACTGTCTCCATGGGA 79
||||| ||||||||| | | ||| |||| ||| |||||| | || | ||||||||||||
Sbjct 1 ATGGCCGACGCTGATGA-GAAGATGAAGACGATCGGTATG-A-AC-CAGTCTCCATGGGA 56
Query 80 ACAGACAAGGTTAAGATCCTTGATGCAAGATTTTAACTTCGGTATACTCGGAAAGACAGA 139
|||||||||||| ||||||| || ||||| ||||||||| || ||||||||| | ||
Sbjct 57 ACAGACAAGGTTTCGATCCTTAATACAAGAATTTAACTTCCGTGTACTCGGAATTCCCGA 116
Query 140 ACTAACTAGAGATCTTACGAG-GTTAAAAGAAAATCTTCTTGCTCGAAAGATTGACG-AT 197
||| ||||||||||||| ||| || ||||| ||| | ||| |||||||||| | | |
Sbjct 117 ACTCACTAGAGATCTTATGAGACTT-AAAGACAATATCCTTAATCGAAAGATTAATGCA- 174
Query 198 GAGAAGCCGAAAGAAAACCCTATTCTTAATGATCCAAAGGTTAGACCCCGTATAAAGATT 257
|| |||| | |||||||||||| ||| |||||||||||| | |||||||||||| ||||
Sbjct 175 GATAAGCAGGAAGAAAACCCTAATCTCAATGATCCAAAGATGAGACCCCGTATACGGATT 234
Query 258 AGGTTTAAACTGATTGATAACCCTAAAGAAGATGTGGAGAGAAAGAAGAAAAGCCACTTA 317
||| | | | | || || || | | || | | | || | || |||
Sbjct 235 AGG--T---C----T-A-AA--CT-----AG-T-T-GATA-ACCCTA-AAGA-CCGTTTA 270
Query 318 GAAGCGAAACAGAAGTTGACTGAGTTATTGATGGCTAC-CGAGAAGAAACTAACTCGGTC 376
|||||||||||||||||||| |||||||| | |||| | |||| ||| ||||||||||||
Sbjct 271 GAAGCGAAACAGAAGTTGACAGAGTTATTAAAGGCT-CTCGAGGAGAGACTAACTCGGTC 329
Query 377 GGAATTGAGAGTTTACACTAACTTGTGTAAAGACTTTAGGTCTCA 421
|||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 330 GGAATTGAGAGTTTACACTAACTTGTGTAAAGACTTAAAGTCTCA 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5