BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930449

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78120.1 | Symbols: TPR12 | Tetratricopeptide repeat (TPR)-l...   183    4e-46


> AT1G78120.1 | Symbols: TPR12 | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr1:29393939-29396086 REVERSE LENGTH=1758
Length=1758

 Score =  183 bits (99),  Expect = 4e-46
 Identities = 138/157 (88%), Gaps = 2/157 (1%)
 Strand=Plus/Plus

Query  21   AATGGCGAAATCGGAGAATATCTCCACGGGTCAAAAT-TTTGGTTGTGAGAGTCTCCTTG  79
            |||||| |||||| |||| || || || |||| |||| ||||||||||||||||||||||
Sbjct  83   AATGGCAAAATCGAAGAAAATTTCTACAGGTC-AAATATTTGGTTGTGAGAGTCTCCTTG  141

Query  80   GATGTATTTTCCAAAGCTGGGGTCCTAGCCGGCAAAAACCCTCTTTACCGGAAAAGGATC  139
            | || |||||||| |||||| | ||| |||| | ||||||||||||||||||||||||||
Sbjct  142  GGTGCATTTTCCAGAGCTGGAGCCCTCGCCGTCGAAAACCCTCTTTACCGGAAAAGGATC  201

Query  140  ATCGGGCAAAAGTTAACTTGCCTTTCAAGTCATCAAC  176
            |||||||||||| ||||||| ||| ||||||||||||
Sbjct  202  ATCGGGCAAAAGATAACTTGTCTTCCAAGTCATCAAC  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5