BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930451

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24250.1 | Symbols:  | glycine-rich protein | chr3:8786689-8...   656    0.0  


> AT3G24250.1 | Symbols:  | glycine-rich protein | chr3:8786689-8787391 
FORWARD LENGTH=703
Length=703

 Score =  656 bits (355),  Expect = 0.0
 Identities = 419/450 (93%), Gaps = 4/450 (1%)
 Strand=Plus/Plus

Query  5    CGATAGTGCTAAACAAAATGGCAATGATGTTCTCATCAGTCACCAAAATCGTGCTTCTCT  64
            |||||| |||||||||||||||||||| |||||||||| | || ||||||||||||||||
Sbjct  59   CGATAGAGCTAAACAAAATGGCAATGAGGTTCTCATCACTTACTAAAATCGTGCTTCTCT  118

Query  65   TTGCAGCTACGTTGCTTTTGGTCCACGCAAGTGCTCGCACTTTGCAGCAAACTCAGGA-T  123
             |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct  119  CTGCAGCTATGTTGCTTTTGGTCCACGCAAGTGCTCGCACTTTACAGCAAACTCA-GACT  177

Query  124  TTGCCTCTCCATGGAGGAGTCA-CTGCTCCTACCAAGGCTGAGTCTCCTATGGTCAATGC  182
             |||||||||| |||||||  | ||||||||||||| | |||| ||| |||||| |||||
Sbjct  178  CTGCCTCTCCAAGGAGGAG-GAGCTGCTCCTACCAAAGATGAGCCTCATATGGTTAATGC  236

Query  183  CCCTCTTGAGGACCAGAAGAACTTCATCTACGGCGGTGGAATTGGTGGTGTTGCCGGAGT  242
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  237  CCCTCTTGAGGACCAGAAGAACTTCATCTACGGCGGTGGAATTGGCGGTGTTGCCGGAGT  296

Query  243  TGGTGGATTCCTAGGGATGCCAGGTGGTGGAAGTGGTGGCACCGGCATGACATTGCCACT  302
            |||||||||| | ||||||||||||||||||||||||||| | |||||||| || |||||
Sbjct  297  TGGTGGATTCATGGGGATGCCAGGTGGTGGAAGTGGTGGCTCTGGCATGACTTTCCCACT  356

Query  303  CCCGAGTGGGACGCCGCTCCTtggtggggctggtgggcttggtggtttaggtggtgcaat  362
            |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  357  CCCGAGTGGGACGCCGCTTCTTGGTGGGGCTGGTGGGCTTGGTGGTTTGGGTGGTGCAAT  416

Query  363  ggggttccctggtggactcggtggtggacctagtggtggtggtgTTCCAAGCTCAAGCGG  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  417  GGGGTTCCCTGGTGGACTCGGTGGTGGACCTAGTGGTGGTGGTGTTCCAAGTTCAAGCGG  476

Query  423  TGGTTCTCCTTAAGACAGATCAAGATGATT  452
            |||||||||||||||||||||| |||||||
Sbjct  477  TGGTTCTCCTTAAGACAGATCATGATGATT  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5