BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930453
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24230.1 | Symbols: | Pectate lyase family protein | chr3:8... 2006 0.0
AT4G13210.2 | Symbols: | Pectin lyase-like superfamily protein... 300 3e-80
> AT3G24230.1 | Symbols: | Pectate lyase family protein | chr3:8774616-8777407
FORWARD LENGTH=1481
Length=1481
Score = 2006 bits (1086), Expect = 0.0
Identities = 1254/1335 (94%), Gaps = 12/1335 (1%)
Strand=Plus/Plus
Query 66 TCATCTTCGTCGTG-TGTGTTCTCACAGCCACGAATCTTCGGAACAAGGAAATCTCTCGA 124
|||||||||| | | || ||||||||||| || ||||| || ||||| ||||||||||||
Sbjct 71 TCATCTTCGTTG-GCTGCGTTCTCACAGCAACAAATCTCCGAAACAACGAAATCTCTCGA 129
Query 125 TCAAGGAAGCTGAAAACAGAGGATTCACAGAGCTTTAACAGTTC-CGCAATGGCGACTAG 183
|| |||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||
Sbjct 130 TCGAGGAAGCTGAAAACAGAGGATTCAAAGAGCTTTAACAGTTCAC-CAATGACGACTAG 188
Query 184 GCTTGATGGTGTA--A-AGTTGAATGAACACGCAGTTACTGATCCAGACAAAGTTGCTCA 240
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 189 GCTTGATGGTGTAGTAGAGTTGAATGAACACGCAGTTACTGATCCAGACAAAGTTGCCCA 248
Query 241 TGAGGTCTCTAAGCTTATTCACATGAGTGAACAGAACATCACTGCAAGGAGGAAGCTTGG 300
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TGAAGTCTCTAACCTTATTCACATGAGTGAACAGAACATCACTGCAAGGAGGAAGCTTGG 308
Query 301 ATTCTTTTCTTGTGGAAATGGCAATCTAATAGATGATTGTTGGCGTTGCGACCGCAACTG 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTTCTTTTCATGTGGAAATGGCAATCTAATAGATGATTGTTGGCGTTGCGACCGCAACTG 368
Query 361 GAACAAGAACCGTAAACACCTCGCGGATTGTGGGATGGGTTTTGGAAGTAAAGC-TAATG 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 369 GAACAAGAACCGTAAACACCTAGCGGATTGTGGGATGGGTTTTGGAAGTAAAGCGT-TTG 427
Query 420 GTGGTCGTAATGGAAGTTACTATGTGGTCACTGACCCGAGTGATGAGGACGTTGTAAATC 479
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 428 GTGGTCGTAATGGAAGTTACTATGTGGTCACTGACCATAGTGATGATGACGTTGTGAATC 487
Query 480 CAAAGCCAGGAACTTTACGCCACGCCGTGATCCAGGTTGAGCCATTATGGATCATCTTTA 539
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 488 CAAAGCCAGGAACTTTACGTCATGCCGTGATCCAGGTTGAACCATTATGGATCATCTTTA 547
Query 540 AAAGAGACATGGTGATAAAGTTGAAACAAGAACTGATCATGAACAGTTTCAAGACCATTG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 548 AAAGAGACATGGTGATAAAGTTGAAACAAGAACTGATCATGAACAGTTTCAAAACCATTG 607
Query 600 ATGCTCGTGGTGCTAACGTCCATATTGCCAATGGTGCTTGCATAACAATCCAGTTTATAA 659
||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 608 ATGCTCGTGGTGCCAATGTCCACATTGCCAATGGTGCTTGCATAACAATCCAAAATATAA 667
Query 660 CCAATGTTATCATTCATGGCTTGCACATTCACGATTGCAAGAGAACGGGGAATGTAACTG 719
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 668 CCAATGTTATCGTTCATGGCTTGCACATTCACGATTGCAAGAGAACCGGGAATGTAACTG 727
Query 720 TCAGAAGCTCACCAAGTCACACCGGGTTTAGGGGAACGGCTGATGGTGATGCTATTAATA 779
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 728 TCAGAAGCTCGCCAAGTCAGGCCGGGTTTAGGGGAACGGCTGATGGTGATGCTATTAATA 787
Query 780 TATTTGGGTCAAGTCATATTTGGATCGACCACAACTCTCTCTCTCACTGTACTGATGGTC 839
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 788 TATTTGGGTCAAGTCATATTTGGATCGACCACAACTCGCTCTCTAACTGTACTGATGGTC 847
Query 840 TTGTTGATGTTGTCATGGGTTCTACTGCCATTACCATTTCCAATAACCATTTCACTCACC 899
||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 848 TTGTTGATGTTGTAAACGGTTCCACTGCCATTACCATTTCCAATAACCATTTCACTCACC 907
Query 900 ACGATGAGGTGATGTTGCTAGGGCACAAAGACTCGTACACACAAGACAAGCTGATGCAAG 959
|||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||
Sbjct 908 ACGATGAGGTGATGTTGCTAGGGCACAATGATTCGTACACACGAGACAAGATGATGCAAG 967
Query 960 TGACAGTTGCGTACAACCATTTTGGAGAGGGGCTTATACAGAGAATGCCAAGGTGCAGGC 1019
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 968 TGACAGTTGCGTATAACCATTTTGGAGAAGGGCTCATACAGAGAATGCCAAGGTGCAGGC 1027
Query 1020 ATGGTTATTTCCATGTGGTTAACAACGATTACACACACTGGAAAATGTATGCTGTTGGAG 1079
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1028 ATGGTTATTTCCATGTGGTTAACAACGATTACACACATTGGAAAATGTATGCTATTGGAG 1087
Query 1080 GAAGTGCAAACCCAACTATAAACAGTCAAGGCAATAGATATGCTGCTCCCAATAACCGCT 1139
|||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 1088 GAAGTGCAAACCCAACGATAAACAGTCAAGGCAATAGATTTGCTGCTCCCAAAAACCACT 1147
Query 1140 CCGCCAAGGAGGTGACAAAAAGATTAGACACAAAAACAAATGAGTGGATGAAGTGGAATT 1199
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1148 CCGCCAAGGAGGTGACAAAAAGATTAGACACAAAAGGTAATGAGTGGATGGAGTGGAATT 1207
Query 1200 GGAGATCAGAAAAAGACCTTCTAGTGAATGGAGCCTTTTTTACACCATCAGGGGAAGGAG 1259
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1208 GGAGATCAGAAAAAGACCTTCTAGTGAATGGAGCGTTTTTTACACCATCAGGTGAAGGAG 1267
Query 1260 CATCAGCAGACTATGCACAAACTTTAAGCTTACCGGCTAAATCAGCCTCAATGGTGGACT 1319
|||||| ||||| |||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 1268 CATCAGGAGACT---CACAAACTTTAAGCTTACCGGCTAAACCAGCTTCAATGGTCGACG 1324
Query 1320 CAATCACTGCTAGTGCAGGTGCACTTGGTTGCCGCAGAGGCAAACCTTGCTACTAGTAAA 1379
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1325 CAATCACTGCTAGTGCAGGTGCACTTAGTTGCCGTAGAGGCAAACCTTGCTACTAGTAAA 1384
Query 1380 ACATCACTCTCTCAA 1394
|||| ||||||||||
Sbjct 1385 ACATTACTCTCTCAA 1399
> AT4G13210.2 | Symbols: | Pectin lyase-like superfamily protein
| chr4:7669948-7673376 FORWARD LENGTH=1650
Length=1650
Score = 300 bits (162), Expect = 3e-80
Identities = 594/799 (74%), Gaps = 44/799 (6%)
Strand=Plus/Plus
Query 383 GCGGATTGTGGGATGGGTTTTGGAAGTAAAGCTAAT-GGTGGTCGTAATGGAAGTTACTA 441
|||||||| | ||| ||||| ||| |||| || | | || || ||| ||||| |||||||
Sbjct 420 GCGGATTGCGCGATCGGTTTCGGACGTAACGC-AGTCGGAGGCCGTGATGGACGTTACTA 478
Query 442 TGTGGTCACTGACCCGA-GTGATGAGGA--CGTTGTAAATCCAAAGCCAGGAACTTTACG 498
| || ||||| || | |||| | || || | || | ||||| || || || | ||
Sbjct 479 CATTGTTACTGATCC-ATCTGATCATGATCCGGT-TACA-CCAAAACCCGGTACACTCCG 535
Query 499 CCACGCCGTGATCCAGGTTGAGCCATTATGGATCATCTTTAAAAGAGACATGGTGATAAA 558
|||| || || || | || || |||||||| |||||||| | |||||||| || |
Sbjct 536 GTACGCTGTTATACAAGACGAACCGCTATGGATCGTCTTTAAACGTGACATGGTCAT-TA 594
Query 559 GTTGAA-ACAAGAACTGATCATGAACAGTTTCAAGACCATTGATGCTCGTGGTGCT-AAC 616
|| || |||||||| |||||||| || ||||| || || |||| |||||||| | |||
Sbjct 595 CTTTAAGCCAAGAACTAATCATGAATAGCTTCAAAACTATCGATGGTCGTGGTG-TCAAC 653
Query 617 GTCCATATTGCCAATGGTGCTTG-CATAACAATCCAGTTTATAACCAATGTTATCATTCA 675
|| ||||| || |||||| || | | || | |||| | || ||| ||||||| ||
Sbjct 654 GTGCATATAGCTGGTGGTGCATGTC-TCACGGTTCAGTACGTTACGAATATTATCATCCA 712
Query 676 TGGCTTGCACATTCACGATTGCAAGAGAACGGGGAATG-TAACT-GTCAGAAGCTCACCA 733
||| | | ||||| ||||| ||| |||| || || | | | | || || || || |
Sbjct 713 TGGGATAAATATTCATGATTGTAAGCGAACTGGTAACGCT-A-TGGTTAGGAGTTC-GGA 769
Query 734 -AGTCACACCGGGTTTAGGGGAAC---GGCTGATGGTGATGCTATTAATATATTTGGGTC 789
||||| || || || |||| ||| |||||||||| |||| || ||||| ||
Sbjct 770 GAGTCA-TTATGG-TT-GGAGAACGATGGCGGATGGTGATGGTATTTCGATTTTTGGATC 826
Query 790 AAGTCATATTTGGATCGACCACAACTCTCTCTCTC-A-CTGTACTGATGGTCTTG-TTGA 846
|||||||||||||| || || || | ||||| || | ||| ||||||| ||| | ||
Sbjct 827 TAGTCATATTTGGATTGATCATAA-T-TCTCTTTCGAGTTGTGCTGATGG-ATTGATAGA 883
Query 847 TGTTGTCATGGGTTCTACTGCCATTACCATTTCCAATAACCATTTCACTCACCACGATGA 906
| | ||||| |||||||| |||||||| || ||||| || ||||||||||| | ||
Sbjct 884 CGCAATTATGGGATCTACTGCTATTACCATCTCTAATAATTATCTCACTCACCACAACGA 943
Query 907 GG-TGATGTTGCTAGGGCACAAAGACTCGTACACACA-AGACAAGCTGATGCAAGTGA-C 963
|| | || ||| | ||||| | || || ||||| || |||||| |||||||||| | |
Sbjct 944 GGCT-ATTTTGTTGGGGCATACCGATTCATACAC-CAGAGACAAAATGATGCAAGTAACC 1001
Query 964 AGTTGCGTACAACCATTTTGGAGAGGGGCTTATACAGAGAATGCCAAGGTGCAGGCATGG 1023
| |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1002 A-TTGCATACAACCATTTTGGAGAAGGTCTTATACAGAGAATGCCAAGGTGCAGGCATGG 1060
Query 1024 TTA-TTTCCATGTGGTTAACAACGATTACACACACTGGAAAATGTATGCTGTTGGAGGAA 1082
|| |||| | || || ||||| |||||||| |||||| |||||||||| |||| ||||
Sbjct 1061 ATACTTTC-ACGTAGTAAACAATGATTACACTCACTGGGAAATGTATGCAATTGGTGGAA 1119
Query 1083 GTGCAAACCCAACTATAAACAGTCAAGGCAATAGATATGCT-GCTCCCAATAA-CCGCTC 1140
|||| ||||| || || || |||||||| || | | | || || ||| || ||| |
Sbjct 1120 GTGCTAACCCTACCATCAATAGTCAAGGAAACCGGT-TCCTTGC-CCCGGGAAACCGTTT 1177
Query 1141 CGCCAAGGAGGTGACAAAA 1159
||||||||||||||| |||
Sbjct 1178 CGCCAAGGAGGTGACGAAA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5