BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930454
Length=269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24225.1 | Symbols: CLE19, ESR19, ATCLE19 | CLAVATA3/ESR-REL... 351 1e-96
> AT3G24225.1 | Symbols: CLE19, ESR19, ATCLE19 | CLAVATA3/ESR-RELATED
19 | chr3:8768846-8769172 FORWARD LENGTH=327
Length=327
Score = 351 bits (190), Expect = 1e-96
Identities = 230/249 (92%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 1 TATTTGACCAAAAATAGACAAATGATCATGAAGGGTTTGATGATATTGGCTTCTTCTCTC 60
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 82 TATTTGACCAAAAATAGACAAATGAAGATAAAGGGTTTGATGATATTGGCTTCTTCTCTC 141
Query 61 CTAATTCTTGCCTTCATACATCACTCGGAATCAGCTTCAATGCGGAGTTTGCTGATGAAG 120
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 142 CTGATTCTTGCCTTCATTCATCAGTCGGAATCAGCTTCAATGCGGAGTTTGCTGATGAAT 201
Query 121 AATGGATCATATGAAGAAGACGAAGCACGAGTTTTAAAGTATGACACTATGGGAACCATC 180
|||||||||||||||||||| ||| || |||| ||||||||||| | |||||||| |||
Sbjct 202 AATGGATCATATGAAGAAGAAGAA-CA--AGTTCTAAAGTATGACTCCATGGGAACGATC 258
Query 181 GCTAACTCTTCTGCTTTAGACTCAAAAAGGGTTATTCCCACTGGTCCAAATCCACTTCAT 240
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 259 GCTAACTCTTCTGCTTTAGACTCAAAACGGGTAATTCCCACTGGTCCAAATCCACTCCAC 318
Query 241 AACAGGTAA 249
|||||||||
Sbjct 319 AACAGGTAA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12315598505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5