BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930459
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24220.1 | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoi... 2663 0.0
> AT3G24220.1 | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid
dioxygenase 6 | chr3:8761434-8763172 FORWARD LENGTH=1739
Length=1739
Score = 2663 bits (1442), Expect = 0.0
Identities = 1644/1743 (94%), Gaps = 8/1743 (0%)
Strand=Plus/Plus
Query 16 CCACCATGCAACACTCTTTTCGTTCTGATCTTCTTCCGACGAAGACTTCTCCTCATTCTC 75
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CCACCATGCAACACTCTCTTCGTTCTGATCTTCTTCCGACGAAGACTTCTCCTCGTTCTC 60
Query 76 ATTTGCTTCCACAAATGAAAAATGCAAATATTTCTCGACGACTTCTCATTAATCCTTTCA 135
|||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 61 ATTTACTTCCACAACCCAAAAATGCAAATATTTCTCGACGAATTCTCATTAACCCTTTCA 120
Query 136 AGATACCAACACTTCCTGATCTCATTTCTCCGGTTACGTCGCCGGTTAAGCTCAAACCAA 195
||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||
Sbjct 121 AGATACCGACACTTCCTGATCTCACTTCTCCGGTTCCGTCACCGGTTAAGCTCAAACCAA 180
Query 196 CGTACCCGAACTTAAACCCTCTTCAGAAGCTAGCGGCTACGATGCTTGACAAGATTGAGT 255
|||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CGTATCCAAACTTAAACCTTCTTCAGAAGCTAGCGGCTACGATGCTCGACAAGATTGAGT 240
Query 256 CCTCTATCGTTACACCTATGGAGCAGAATCGCCCGCTTCCTAAACCGACTGATCCGGCGA 315
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 CCTCTATCGTTATTCCTATGGAGCAGAATCGCCCGCTTCCTAAACCGACCGACCCGGCGG 300
Query 316 TACAACTGTCCGGTAACTTCGCTCCGGTTCATGAATGTCCGGTTCAGACCGGTTTAGAAA 375
| ||| | || |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 301 TTCAATTATCAGGTAACTTCGCTCCGGTTAATGAATGTCCGGTTCAGAACGGTTTAGAAG 360
Query 376 TCCTTGGTCAGATTCCTTCTTGTCTAAAAGGAGTTTACATCCGTAACGGTGCTAACCCTA 435
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TGGTTGGTCAGATTCCTTCTTGTCTAAAAGGAGTTTACATCCGTAACGGTGCAAACCCTA 420
Query 436 AGTTTCCGCCGTTAGCCGGACATCATTTATTTGACGGTGACGGAATGATTCACGCCGTTA 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTTCCGCCGTTAGCCGGACATCATTTATTTGACGGTGACGGAATGATTCACGCCGTTA 480
Query 496 GTATCGGTTCTGATAACCAGGTTAGTTACAGCTGCCGGTACACTAAAACAAACCGGCTTA 555
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTATCGGTTTTGATAACCAGGTTAGTTACAGCTGCCGGTACACTAAAACAAACCGGCTTG 540
Query 556 TTCAAGAAACCGAGCTTGGACGATCGGTTTTTCCTAAACCAATCGGCGAGCTTCACGGCC 615
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 TTCAAGAAACCGCGCTTGGACGATCGGTTTTCCCTAAACCAATCGGCGAGCTTCACGGCC 600
Query 616 ATTCCGGTCTAGCTCGGCTCGCTCTCTTCTCGGCTCGAGCTGGGATCGGTCTCGTTGACG 675
|||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||||
Sbjct 601 ATTCCGGTCTAGCTCGACTCGCTCTCTTCACGGCTCGAGCTGGGATCGGTCTAGTGGACG 660
Query 676 GGACACGTGGCATGGGCGTAGCTAACGCCGGCGTGGTTTACTTTAACGGGAGGTTATTGG 735
||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
Sbjct 661 GGACACGTGGCATGGGCGTAGCTAACGCCGGTGTGGTTTTCTTTAACGGCAGGTTATTAG 720
Query 736 CCATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGA 780
Query 796 CGATCGGACGGTTCGGATTCGATGATCAGATCGACTGTTCTGTGATAGCGCATCCTAAGG 855
||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||
Sbjct 781 CGATCGGACGGTTCGGATTCGATGACCAGATTGACTCTTCAGTGATAGCGCATCCTAAGG 840
Query 856 TGGACCCAACCACAGGAGATCTCCATACTCTGAGCTACAACGTTTTGAAGAAACCTCATC 915
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 TGGACGCGACCACAGGAGATCTCCATACACTGAGCTACAACGTTTTGAAGAAACCTCATC 900
Query 916 TCAGGTATCTTAAATTCGACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCC 975
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCAGGTATCTTAAATTCAACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCC 960
Query 976 CTGAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTCGTCGTTATACCGGATC 1035
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 CTGAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTTGTCGTTATACCGGATC 1020
Query 1036 AACAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCGGTTATCTACGTTA 1095
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 AGCAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCCGTTATCTACGTTA 1080
Query 1096 AAGAGAAAATGTCGAGATTTGGAGTTTTGTCGAAGCAGGATCCGACCGGGTCCGG-TATA 1154
|||| |||||| ||||||||||||||||||| |||||||||| ||||||||| || ||||
Sbjct 1081 AAGAAAAAATGGCGAGATTTGGAGTTTTGTCAAAGCAGGATCTGACCGGGTC-GGATATA 1139
Query 1155 AATTGGGTTGATGTACCGGATTGTTTCTGTTTCCATTTATGGAATGCGTGGGAAGAGCGA 1214
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1140 AATTGGGTTGATGTACCGGATTGTTTCTGTTTCCATCTATGGAATGCGTGGGAAGAGAGA 1199
Query 1215 ACCGAAGATGGAGATCTGGTTATCGTCGTAATCGGGTCGTGTATGAGCCCGCCCGATACG 1274
|||||||| ||||| | |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1200 ACCGAAGAGGGAGACCCAGTTATCGTCGTAATCGGGTCATGTATGAGCCCACCCGACACG 1259
Query 1275 ATCTTTAGTGAATCAGGAGAACCGACCCGGATTGAATTAAGCGAGATACGGTTAAACATG 1334
||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||
Sbjct 1260 ATCTTTAGTGAATCAGGAGAACCAACCCGGGTTGAATTAAGTGAGATCCGGTTAAACATG 1319
Query 1335 CGAACAAAAGAATCGAACCGGAAGGTTATCGTAACCGG-GATGAATTTAGAAGCTGGTCA 1393
|| ||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||
Sbjct 1320 CGTACAAAAGAATCGAACCGTAAGGTTATCGTAACCGGAG-TGAATTTAGAAGCGGGTCA 1378
Query 1394 TATAAACCCG-AGTTTCGTGGGCCTAAAAAACCGGTTCGTTTACATAGCAATAGCCGATC 1452
||||||| | |||| |||||||| |||| || ||||||||||||||||||||||||||
Sbjct 1379 CATAAACC-GTAGTTACGTGGGCCGGAAAAGCCAGTTCGTTTACATAGCAATAGCCGATC 1437
Query 1453 CCTGGCCCAAATGCAGTGGCATTGCGAAGGTAGATATAGAAAACGGCACCGTTTCACAGT 1512
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1438 CTTGGCCCAAATGCAGTGGCATTGCGAAGGTAGATATACAAAACGGCACCGTTTCAGAGT 1497
Query 1513 TTAATTACGGACC-AGGCCGGTTCGGTGGGGAACCGTACTTTGTACCGGAGGGAGAAGGA 1571
||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1498 TTAATTACGGACCGAG-CCGGTTCGGTGGAGAACCGTGCTTTGTACCGGAGGGAGAAGGA 1556
Query 1572 GAAGAAGACAAAGGTTATGTGATGGGGTTTGTGAGAGACGAAGAGAAAGACGAGTCGGAG 1631
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GAAGAAGACAAAGGTTATGTAATGGGGTTTGTGAGAGACGAAGAGAAAGACGAGTCGGAG 1616
Query 1632 TTTGTGGTGGTCGACCCGACGGATATGAAGCAAGTCGCGGCGGTGCGCCTGCCGGAGAGG 1691
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1617 TTTGTGGTGGTCGACGCGACGGATATGAAGCAAGTCGCGGCGGTGCGCTTGCCGGAGAGG 1676
Query 1692 GTACCTTACGGTTTCCATGGAACGTTCGTGAGCGAGAATCAGTTAAAGGAACAAGTTTTC 1751
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1677 GTACCTTATGGTTTCCATGGAACGTTCGTGAGCGAGAATCAGTTGAAGGAACAAGTTTTC 1736
Query 1752 TGA 1754
|||
Sbjct 1737 TGA 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5